View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_low_11 (Length: 370)
Name: NF4657_low_11
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 30337831 - 30337496
Alignment:
| Q |
20 |
cagaataataaaacaattctaatttttgattaacttcttaattggctctcaaggcttacaacataaaggaaactagtaattaaatctctgaaattacagt |
119 |
Q |
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| T |
30337831 |
cagaataataaaacaattcaaatttttcattaacttcttaattggctc--aaggcttacaacataaaggaaactagtaattaaatcactgaaattacagt |
30337734 |
T |
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| Q |
120 |
acatatctgcaatttcaggtgtcacaacaaacaagtgactttagggaattcaaacaaacaagacattataaaagaaaaaagcctttgagccaaaagt--- |
216 |
Q |
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| T |
30337733 |
acatatctggaatttcaggtgttacaacaaacaagtgactttagggaattcaaacaaacaagacattataaaagaaaaaagcctttgagccaaaagtgct |
30337634 |
T |
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| Q |
217 |
-gcttatatcagaaactatcattctttttctttcctaaccagagatttatgtgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgag |
315 |
Q |
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| T |
30337633 |
tgcttatatcagaaactatcattctttttctttcccaaccagagatttatgtgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgag |
30337534 |
T |
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| Q |
316 |
aacgacgcctgaatgggagaaaggttatctatgaaaac |
353 |
Q |
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| T |
30337533 |
aacgacccctgaatgggagaaaggttatctatgaaaac |
30337496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 30326004 - 30325962
Alignment:
| Q |
196 |
aaaagcctttgagccaaaagtgcttatatcagaaactatcatt |
238 |
Q |
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| T |
30326004 |
aaaagcctttgagccaaaagtgcttttatgagaaactatcatt |
30325962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 30321862 - 30321812
Alignment:
| Q |
39 |
taatttttgattaacttcttaattggctctcaaggcttacaacataaaggaaa |
91 |
Q |
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| T |
30321862 |
taatttttcattaacttcttaattgg--ctcaaggcttacaatataaaggaaa |
30321812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 30333556 - 30333492
Alignment:
| Q |
149 |
aacaagtgactttagggaattcaaacaaacaagacattataaaagaaaaaagcctttgagccaaaagt |
216 |
Q |
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| T |
30333556 |
aacaagtgactttagggcattcaaacaaacgagac--tttaatag-taaaagcctttgagccaaaagt |
30333492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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