View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4657_low_12 (Length: 359)

Name: NF4657_low_12
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4657_low_12
NF4657_low_12
[»] chr4 (4 HSPs)
chr4 (12-122)||(24414295-24414405)
chr4 (12-86)||(28287361-28287435)
chr4 (15-86)||(15634333-15634403)
chr4 (12-60)||(54239223-54239271)
[»] chr3 (2 HSPs)
chr3 (12-86)||(27484708-27484782)
chr3 (82-118)||(33528464-33528500)
[»] chr1 (1 HSPs)
chr1 (12-86)||(50005481-50005555)
[»] chr6 (1 HSPs)
chr6 (12-58)||(2339480-2339526)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 24414405 - 24414295
Alignment:
Q  12 agatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggactgactcgaatttagccgttcgaagtcatttgaaggt 111  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| |    
T  24414405 agatgaagtggcgcgcaagaaatgctcacttggaatagtgtagatttgatatctgatgtcggattgactcgaatttagccgttcgaagtcatctgaagtt 24414306  T
Q  112 ccaaaactaca 122  Q
    |||||||||||    
T  24414305 ccaaaactaca 24414295  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 28287361 - 28287435
Alignment:
Q  12 agatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggactgactcgaatt 86  Q
    ||||||||| |||||||||||||| ||| |  |||| ||| ||||||||||||||||||| || ||| |||||||    
T  28287361 agatgaagttgcgcgcaagaaatgttcaatgaaaatggtgcagatttgatatctggtgtctgattgattcgaatt 28287435  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 15634333 - 15634403
Alignment:
Q  15 tgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggactgactcgaatt 86  Q
    ||||||||||| ||||||| | ||  |||||||| ||||||||||| ||||||||||||| |||||| ||||    
T  15634333 tgaagtggcgcacaagaaa-gctcgtttgaaatattgtagatttgacatctggtgtcggattgactcaaatt 15634403  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 54239223 - 54239271
Alignment:
Q  12 agatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttga 60  Q
    |||||||||| ||||||||||||| ||| |  |||||||||||||||||    
T  54239223 agatgaagtgacgcgcaagaaatgctcaatgaaaatagtgtagatttga 54239271  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 27484782 - 27484708
Alignment:
Q  12 agatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggactgactcgaatt 86  Q
    |||| ||||||||| ||||||| | | |||||||||||||||||||||| |||||||||| ||  ||||||||||    
T  27484782 agataaagtggcgcacaagaaaggttaacttgaaatagtgtagatttgacatctggtgtcagatcgactcgaatt 27484708  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 33528500 - 33528464
Alignment:
Q  82 gaatttagccgttcgaagtcatttgaaggtccaaaac 118  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  33528500 gaatttagccattcgaagtcatctgaaggtccaaaac 33528464  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 50005555 - 50005481
Alignment:
Q  12 agatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggactgactcgaatt 86  Q
    |||||| ||||||||||||||    ||||||||||||||| |||||||||||| | |||| || |||||||||||    
T  50005555 agatgacgtggcgcgcaagaatgaatcacttgaaatagtgcagatttgatatccgatgtcagattgactcgaatt 50005481  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 2339526 - 2339480
Alignment:
Q  12 agatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagattt 58  Q
    |||||||||||| | ||||||||| ||||||||||| ||||||||||    
T  2339526 agatgaagtggctcacaagaaatgctcacttgaaatggtgtagattt 2339480  T

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