View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4657_low_16 (Length: 310)
Name: NF4657_low_16
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 9218506 - 9218781
Alignment:
| Q |
20 |
agaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttcctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9218506 |
agaagctctgcaagaactactccaaagctatacacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttcctt |
9218605 |
T |
|
| Q |
120 |
gtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggt |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9218606 |
gtaccattgtcgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggt |
9218705 |
T |
|
| Q |
220 |
actcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctctgct |
295 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9218706 |
actcttaacatctctatggataattggaattgatgcagctgaatgtagatatgataaagcaccagctgtctctgct |
9218781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 9170423 - 9170698
Alignment:
| Q |
20 |
agaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttcctt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
9170423 |
agaagctctgcaagaactactccaaagctataaacatcacttttttcggttaatttatgtgtttgcatatactcgggatctaagtatccaagtgttcctt |
9170522 |
T |
|
| Q |
120 |
gtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggt |
219 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9170523 |
gcaccattgttgctatctctgtttgatcaagtggaaccaatcttgaagctccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggt |
9170622 |
T |
|
| Q |
220 |
actcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctctgct |
295 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
9170623 |
actcttaacatctctatggataattggaattgatgcagatgaatgtagatacgataaagctccagctgtctctgct |
9170698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 9118855 - 9118580
Alignment:
| Q |
20 |
agaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttcctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
9118855 |
agaagctctgcaagaactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttcctt |
9118756 |
T |
|
| Q |
120 |
gtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggt |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9118755 |
gtaccactgttgctatctcggtttgatcaagtggaaccaatttggaagctccgaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggt |
9118656 |
T |
|
| Q |
220 |
actcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctctgct |
295 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
9118655 |
actcttaacatctctatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgct |
9118580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 9199990 - 9200261
Alignment:
| Q |
20 |
agaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttcctt |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
9199990 |
agaagctctgcaagaaccactccaaagctataaacatcacttttctcggttagttgatgtgtttgcatatactcgggatctaagtatccaagtgttcctt |
9200089 |
T |
|
| Q |
120 |
gtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggt |
219 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9200090 |
gcaccattgttgctatctctgtttgatcaagtggaaccaatctggaagctccaaagtcagaaacttttgcggtgtaattgtcatccaagagaatgttggt |
9200189 |
T |
|
| Q |
220 |
actcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctc |
291 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
9200190 |
actcttaacatctctgtggataattggaattgatgcagctgaatgtagatatgataaagctccagctgtctc |
9200261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 9161596 - 9161872
Alignment:
| Q |
19 |
aagaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttcct |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
9161596 |
aagaagctctgcaagaactacaccaaagctataaacatcacttttctctgttagttgatgtgtttgcatatactccggatctaagtaaccaagagttcct |
9161695 |
T |
|
| Q |
119 |
tgtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttgg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
9161696 |
tgtaccattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttgg |
9161795 |
T |
|
| Q |
219 |
tactcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctctgct |
295 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||||| |||||||| ||| || ||||| || |||||||||||| |
|
|
| T |
9161796 |
tactcttaacatctctatggataataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgct |
9161872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 9155685 - 9155960
Alignment:
| Q |
20 |
agaagctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttcctt |
119 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9155685 |
agaagctccgcaagcactactccaaagctatagacatcacttttctcggttaattgatgagtttgcatatactctggatctaggtatccaagagttcctt |
9155784 |
T |
|
| Q |
120 |
gtaccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggt |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| || || |||||||| || ||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
9155785 |
gaaccattgttgctatctcggtttgatcaagtggaactaacctcgaagctccaaaatcggaaactttcgctgtgtaattgtcatccaagagaatgttggt |
9155884 |
T |
|
| Q |
220 |
actcttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagctgtctctgct |
295 |
Q |
| |
|
||| || ||||||||||| ||||| || |||||||||| |||||||||||| || ||||| || |||||||||||| |
|
|
| T |
9155885 |
acttttgacatctctatggataatcggtattgatgcagatgaatgtagatacgataaagctccggctgtctctgct |
9155960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 9229394 - 9229650
Alignment:
| Q |
23 |
agctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgta |
122 |
Q |
| |
|
|||||||| || ||||| || |||||||||||||||||||| || |||| ||| |||||||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
9229394 |
agctctgccagtactaccccgaagctataaacatcacttttctctgttagttggtgtgtttgcatatattctggatctaaatagccaagagttccttgta |
9229493 |
T |
|
| Q |
123 |
ccattgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtact |
222 |
Q |
| |
|
||| || |||||| || |||||||||||||||||||||||||| || || || || ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9229494 |
ccacagtggctatcatagtatgatcaagtggaaccaatcttgaagcaccaaaatcagacacttttgcagtgtaattgtcatccaagagaatgttggcact |
9229593 |
T |
|
| Q |
223 |
cttaacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagc |
279 |
Q |
| |
|
|| ||||||||||| |||||||| | ||||||| ||||||||||||||| ||||| |
|
|
| T |
9229594 |
tttgacatctctatggataattggtaaggatgcagatgaatgtagatatgataaagc |
9229650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 279
Target Start/End: Complemental strand, 1868862 - 1868608
Alignment:
| Q |
25 |
ctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtacc |
124 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||| |
|
|
| T |
1868862 |
ctctacaagaactactccaaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcacc |
1868763 |
T |
|
| Q |
125 |
attgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactct |
224 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||||||||| || || || ||||| || |||| | ||| ||||||||||| ||||| |
|
|
| T |
1868762 |
attgtggctatttcagtttgatcaagtggaaccaatcttgaagctccaaaatccgatactttggcggtgttggttctatctaagagaatgttatcactct |
1868663 |
T |
|
| Q |
225 |
taacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaagc |
279 |
Q |
| |
|
| ||||||||||| || || || ||||| ||| ||||||||||||||||||||| |
|
|
| T |
1868662 |
tgacatctctatggatgatgggtattgaggcatatgaatgtagatatgacaaagc |
1868608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 1843253 - 1843000
Alignment:
| Q |
25 |
ctctgcaagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtacc |
124 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||| |
|
|
| T |
1843253 |
ctctacaagaactactccaaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcacc |
1843154 |
T |
|
| Q |
125 |
attgttgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactct |
224 |
Q |
| |
|
||||| ||||| || |||||||||| ||||||||||||||||||||| || || || ||||| || |||| | ||| ||||||||||| ||||| |
|
|
| T |
1843153 |
attgtggctatttcagtttgatcaattggaaccaatcttgaagctccaaaatctgatactttggctgtgttggttctatctaagagaatgttatcactct |
1843054 |
T |
|
| Q |
225 |
taacatctctatgaataattggaattgatgcagctgaatgtagatatgacaaag |
278 |
Q |
| |
|
| ||||||||||| || ||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
1843053 |
tgacatctctatggattattggtattgaggcatatgaatgtagatatgacaaag |
1843000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 275
Target Start/End: Complemental strand, 1857259 - 1857014
Alignment:
| Q |
30 |
caagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtaccattgt |
129 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
1857259 |
caagaactactccaaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgt |
1857160 |
T |
|
| Q |
130 |
tgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaaca |
229 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| || || || ||||| || |||| | |||| ||||||||||| |||||| ||| |
|
|
| T |
1857159 |
ggctatttcagtttgatcaagtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgaca |
1857060 |
T |
|
| Q |
230 |
tctctatgaataattggaattgatgcagctgaatgtagatatgaca |
275 |
Q |
| |
|
|||||||| || || || |||| ||| ||||||||||||||||| |
|
|
| T |
1857059 |
tctctatggatgatgggtgttgaggcatatgaatgtagatatgaca |
1857014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 30 - 286
Target Start/End: Original strand, 1815785 - 1816041
Alignment:
| Q |
30 |
caagaactactccaaagctataaacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtaccattgt |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||| ||||| |||| ||||||||| |||||||| |
|
|
| T |
1815785 |
caagaactactccaaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaatagttccttgcaccattgt |
1815884 |
T |
|
| Q |
130 |
tgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaaca |
229 |
Q |
| |
|
|||| || |||||||||||||||| ||| ||||| ||||| || || || ||||| || |||| | |||| ||||||||||| | |||||| ||| |
|
|
| T |
1815885 |
ggctacttcagtttgatcaagtggaatcaaccttgatgctccaaaatctgacactttagcggtgttggttccatctaagagaatgttagcactcttgaca |
1815984 |
T |
|
| Q |
230 |
tctctatgaataattggaattgatgcagctgaatgtagatatgacaaagcaccagct |
286 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||| |||||||||| ||| |||||| |
|
|
| T |
1815985 |
tctctatggataatgggtattgaggcagctgaatgcagatatgacagagctccagct |
1816041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 41703820 - 41703857
Alignment:
| Q |
38 |
actccaaagctataaacatcacttttttcggttaattg |
75 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
41703820 |
actccatagctataaacatcacttttatcggttaattg |
41703857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 40573421 - 40573369
Alignment:
| Q |
23 |
agctctgcaagaactactccaaagctataaacatcacttttttcggttaattg |
75 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||| || || |||||||| |
|
|
| T |
40573421 |
agctctgctaggactactccaaatctataaacatcactcttctctgttaattg |
40573369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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