View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_low_2 (Length: 526)
Name: NF4657_low_2
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 4e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 310 - 510
Target Start/End: Complemental strand, 40467006 - 40466806
Alignment:
| Q |
310 |
tatatatctttcatctagttgatatctcactagcaactcacacttgaacttcaacacggttgatttcttgtgtttaacttacacatgttgaagattaact |
409 |
Q |
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| T |
40467006 |
tatatatctttcatctagttgatatctcactagcaactcacacttgaacttcaacacggttgatttcttgtgtttaacttacacatgttgaagattaact |
40466907 |
T |
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| Q |
410 |
atctaaagagcaaacaattacatcttcattaaaacctaaaaatattgagcatatagatcacttttcttgtatatcttttaataaacgctcacgacattca |
509 |
Q |
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| T |
40466906 |
atcgaaagagcaaacaatcatatcttcattaaaacctaaaaatattgagcatataaatcacttttcttgtatatcttttaataaatactcacgacattca |
40466807 |
T |
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| Q |
510 |
t |
510 |
Q |
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| T |
40466806 |
t |
40466806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 40467310 - 40467131
Alignment:
| Q |
19 |
acaatatgggtggaacaagatagggtttcacgagctcatcacatacagtacgttccaaagtgtgtgacaaaagtttcaagactagctatgggtggatcac |
118 |
Q |
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| T |
40467310 |
acaatatgggtggaacaagatagggtttcacgagctcatcacatacagtacgttccaaagtgtgtgacaaaagtttcaagactagctatgggtggatcac |
40467211 |
T |
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| Q |
119 |
gagtgcaataagagaataagtttcaaaactattttttaaaagagcaaaatatactagaatataagtttcaatccaaattg |
198 |
Q |
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| T |
40467210 |
gagtgcaataagagaataagtttcaaaactattttttaaaagagcaaaatatactagaatataagtttcaatcctaattg |
40467131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 40467072 - 40467026
Alignment:
| Q |
239 |
gttattaacattttgccaaaacttgaaagtattgagtatataaatca |
285 |
Q |
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| T |
40467072 |
gttattaccattttgccaaaacttgaaagtattgagtatataaatca |
40467026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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