View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_low_28 (Length: 243)
Name: NF4657_low_28
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 8443855 - 8443636
Alignment:
| Q |
10 |
agaaaaccttgaaaatctcagccattttttcacctttacatttaagaaatatcaattgtttttatcactttatatcgtaaaaattctcgtgcaagaattc |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
8443855 |
agaaaaccttgaaaatctcagccatttttttacctttacgtttaagaaatataaattgtttttatcactttatatcgtgaaaattctcgttcaagaattc |
8443756 |
T |
|
| Q |
110 |
cttcattaaaattaaaacaattgctaaatattttgaaagtacattgatgtagcatgtttgtccctttagctctcataatagagcaaatgtaaaaatattt |
209 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8443755 |
cttcattaaaattaaaacaattgctaagtattttgaaagcacattgatgtagcatgtttgtccctttagctctcataatagaggaaatgtaaaaatattt |
8443656 |
T |
|
| Q |
210 |
cttgtctttatagttcattt |
229 |
Q |
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|||||||||||||||||||| |
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| T |
8443655 |
cttgtctttatagttcattt |
8443636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 23123241 - 23123356
Alignment:
| Q |
99 |
tgcaagaattccttcattaaaattaaaacaattgctaaatattttgaaagtacattgatgtagcatgtttgtccctttagctctcataatagagcaaatg |
198 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| | | |||| ||| || |
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| T |
23123241 |
tgcaagaattctttcattaaaattagaacaattgctaaatattttgaaagtacattgttgtatcatgttttcccctttagcgcatagaatatagccaaca |
23123340 |
T |
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| Q |
199 |
taaaaatatttcttgt |
214 |
Q |
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|||||||||||||||| |
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| T |
23123341 |
taaaaatatttcttgt |
23123356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 23233328 - 23233206
Alignment:
| Q |
99 |
tgcaagaattccttcattaaaattaaaacaattgctaaatattttgaaagtacattgatgtagcatgtttgtccctttagctctcataatagagcaaatg |
198 |
Q |
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|||||||||||||| |||||||||| ||||||| |||||| ||| |||||||||||||| || ||||||||||||||| ||| | | || ||| || |
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| T |
23233328 |
tgcaagaattcctttattaaaattagaacaatttctaaatgtttcgaaagtacattgatatattatgtttgtccctttaactcatagagtatagctaaca |
23233229 |
T |
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| Q |
199 |
taaaaatatttcttgtctttata |
221 |
Q |
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||||||||||| ||||||||||| |
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| T |
23233228 |
taaaaatatttattgtctttata |
23233206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 23238727 - 23238649
Alignment:
| Q |
99 |
tgcaagaattccttcattaaaattaaaacaattgctaaatattttgaaagtacattgatgtagcatgtttgtcccttta |
177 |
Q |
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||||||||||||||||||||||||| |||||||||||||| | | |||||| ||| || || |||||||||||||||| |
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| T |
23238727 |
tgcaagaattccttcattaaaattagaacaattgctaaatgtatcgaaagtgcatcaatatatcatgtttgtcccttta |
23238649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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