View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_low_29 (Length: 242)
Name: NF4657_low_29
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_low_29 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 1810849 - 1811068
Alignment:
| Q |
17 |
caaaggcataatatggtggtaataatcaatgatagctcagaaaattaacgggatggggttatgggtcagacaattatctttgccgagtccatgagcaatg |
116 |
Q |
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| T |
1810849 |
caaaggcataatatggtgctaataatcaatgatagctcagaaaattaacgggatggggttatgggtcaaacgattatctttgccgagtccatgagcaatg |
1810948 |
T |
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| Q |
117 |
accagtgttaagagttacacattgaaaatgagtttataagtgggagtcatccctcactctataa---------gttggtttgagttaagcccaaccaaaa |
207 |
Q |
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| T |
1810949 |
accagtgttaagagttacacattgaaaatgagtttataagtgggagtcatccctcactctataagttggttttgttggtttgagttaagcccaaccaaaa |
1811048 |
T |
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| Q |
208 |
ttataagatggctagaaagt |
227 |
Q |
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| T |
1811049 |
ttataagatggctagaaagt |
1811068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 27829856 - 27829905
Alignment:
| Q |
139 |
tgaaaatgagtttataagtgggagtcatccctcactctataagttggttt |
188 |
Q |
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| T |
27829856 |
tgaaaatgagtttataagtgggagtcatccctcaccttataagtcggttt |
27829905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 51215652 - 51215624
Alignment:
| Q |
141 |
aaaatgagtttataagtgggagtcatccc |
169 |
Q |
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| T |
51215652 |
aaaatgagtttataagtgggagtcatccc |
51215624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 24735 - 24701
Alignment:
| Q |
139 |
tgaaaatgagtttataagtgggagtcatccctcac |
173 |
Q |
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| T |
24735 |
tgaaaatgagtttataagtgggaggcatccctcac |
24701 |
T |
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