View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4657_low_3 (Length: 506)

Name: NF4657_low_3
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4657_low_3
NF4657_low_3
[»] chr1 (4 HSPs)
chr1 (197-496)||(48950273-48950572)
chr1 (1-196)||(48950052-48950247)
chr1 (1-64)||(51113111-51113174)
chr1 (1-64)||(25682447-25682510)
[»] chr4 (8 HSPs)
chr4 (197-496)||(51262829-51263128)
chr4 (68-196)||(51262675-51262803)
chr4 (1-64)||(51259858-51259921)
chr4 (1-64)||(56065425-56065488)
chr4 (1-64)||(2064649-2064712)
chr4 (1-64)||(28538113-28538176)
chr4 (1-64)||(49951109-49951172)
chr4 (1-64)||(55734805-55734868)
[»] chr8 (6 HSPs)
chr8 (197-496)||(7123728-7124027)
chr8 (197-491)||(43321375-43321670)
chr8 (68-189)||(43321221-43321342)
chr8 (72-192)||(7124057-7124177)
chr8 (340-496)||(24602213-24602369)
chr8 (1-64)||(40589043-40589106)
[»] chr2 (2 HSPs)
chr2 (68-496)||(27265147-27265570)
chr2 (1-64)||(18345802-18345865)
[»] scaffold0050 (1 HSPs)
scaffold0050 (75-193)||(14193-14311)
[»] chr5 (7 HSPs)
chr5 (1-61)||(8387885-8387945)
chr5 (1-64)||(41941065-41941128)
chr5 (1-58)||(30223127-30223184)
chr5 (1-64)||(4267907-4267970)
chr5 (1-64)||(15989077-15989140)
chr5 (3-54)||(34653921-34653972)
chr5 (1-58)||(27533235-27533292)
[»] chr7 (3 HSPs)
chr7 (1-61)||(22289040-22289100)
chr7 (1-58)||(29201277-29201334)
chr7 (2-57)||(11745970-11746025)
[»] chr3 (5 HSPs)
chr3 (1-64)||(55199307-55199370)
chr3 (417-466)||(1046080-1046129)
chr3 (1-64)||(36310824-36310887)
chr3 (6-64)||(42340609-42340667)
chr3 (1-58)||(53496846-53496903)
[»] scaffold0446 (1 HSPs)
scaffold0446 (1-45)||(1-45)
[»] chr6 (2 HSPs)
chr6 (1-58)||(19364273-19364330)
chr6 (1-54)||(30802298-30802351)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 197 - 496
Target Start/End: Original strand, 48950273 - 48950572
Alignment:
Q  197 acgtaaatgggtgaccatgcaatttaatatcggataaggcacaatcatcaaccgcttcacggaaacccatacacaaccaattaggatgaggatgaatacc 296  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48950273 acgtaaatgagtgaccatgcaatttaatatcggataaggcacaatcatcaaccacttcacggaaacccatacacaaccaattaggatgaggatgaatacc 48950372  T
Q  297 agacttgtcttgttgagacaacaagtcattaaagtcaccaatgatacaccacggaagagatgacatatcccgcaactcccgaagtaaatcccaagcatca 396  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48950373 agacttgtcttgttgagacaacaagtcattaaagtccccaatgatacaccacggaagagatgacatatcccgcaactcccgaagtaaatcccaagcatca 48950472  T
Q  397 cgactacgagcacgttcaggaaagccataataacaagttaatctccaatcaccagcttctttatcctccacaatcatattaatgaaatttcgagaataat 496  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48950473 cgactacgagcacgttcaggaaagcgataataataagttaatctccaatcaccagcttctttatcctccacaatcatattaatgaaatttcgagagtaat 48950572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 48950052 - 48950247
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgccacttgggacagtatcaagaagtattggagtgtgatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48950052 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgccacctgggacagtatcaagaagtattggagtgtgatca 48950151  T
Q  101 gagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagccatatccaatctttcttctagtact 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48950152 gagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagccatatccaatctttcttctagtact 48950247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 51113174 - 51113111
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51113174 cttgcactctattctgcccgtgttgcacaatcgatgatgagggctgtttatgaacctcctgcca 51113111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25682510 - 25682447
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    ||||||||||||||| ||| |||||||||||||  ||| ||||||||||||||| ||| |||||    
T  25682510 cttgcactctattctacccatgttgcacaatcggcgataagggttgtttatgaatctcttgcca 25682447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 197 - 496
Target Start/End: Original strand, 51262829 - 51263128
Alignment:
Q  197 acgtaaatgggtgaccatgcaatttaatatcggataaggcacaatcatcaaccgcttcacggaaacccatacacaaccaattaggatgaggatgaatacc 296  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51262829 acgtaaatgggtgacggtgcaatttaatatcggataaggcacaatcatcaaccgcttcacggaaacccatacacaaccaattaggatgaggatgaatacc 51262928  T
Q  297 agacttgtcttgttgagacaacaagtcattaaagtcaccaatgatacaccacggaagagatgacatatcccgcaactcccgaagtaaatcccaagcatca 396  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51262929 agacttgtcttgttgagacaacaagtcattaaagtccccaatgatccaccacggaagagatgacatatcccgcaactcccgaagtaaatctcaagcatca 51263028  T
Q  397 cgactacgagcacgttcaggaaagccataataacaagttaatctccaatcaccagcttctttatcctccacaatcatattaatgaaatttcgagaataat 496  Q
    | || |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51263029 caacgacgaacacgttcaagaaagccataataacaagttaatctccaatcaccagcttctttatcctccacaatcatattaatgaaatttcgagagtaat 51263128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 51262675 - 51262803
Alignment:
Q  68 gggacagtatcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttccca 167  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  51262675 gggacaatatcaagaagtattgaagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttttggaaaacgttgtagccattctgagtttccca 51262774  T
Q  168 tagccatatccaatctttcttctagtact 196  Q
    || ||||||||||||||||||||||||||    
T  51262775 taaccatatccaatctttcttctagtact 51262803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51259858 - 51259921
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51259858 cttgcactctattctgcccgtgttgcgcaatcgatgatgagggttgtttatgaacctcctgcca 51259921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 56065488 - 56065425
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  56065488 cttgcactctattctgcccgtgttgcacaatcgatgacgagggttgtttatgaacctcctgcca 56065425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2064712 - 2064649
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    ||||||||||||| || ||||||||||||| ||||| ||| ||||||||| ||||||| |||||    
T  2064712 cttgcactctattttgtccgtgttgcacaaccgatggtgaaggttgtttacgaacctcttgcca 2064649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 28538113 - 28538176
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    ||||||||||| | ||||||||||| ||||||| || |||| | |||||||||||||| |||||    
T  28538113 cttgcactctactgtgcccgtgttgtacaatcggtggtgagtggtgtttatgaacctcttgcca 28538176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 49951172 - 49951109
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    ||||||||||||| |||| |||||||||||  | || |||| |||||||||||||||| |||||    
T  49951172 cttgcactctattatgcctgtgttgcacaactggtggtgagcgttgtttatgaacctcttgcca 49951109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 55734868 - 55734805
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    ||||||||||||| || | || |||||||| ||||||||| |||||||||||||| || |||||    
T  55734868 cttgcactctattttgtctgtattgcacaaccgatgatgatggttgtttatgaacatcttgcca 55734805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 197 - 496
Target Start/End: Complemental strand, 7124027 - 7123728
Alignment:
Q  197 acgtaaatgggtgaccatgcaatttaatatcggataaggcacaatcatcaaccgcttcacggaaacccatacacaaccaattaggatgaggatgaatacc 296  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  7124027 acgtaaatgggtgaccatgcaatttaatatcagatacggcacaatcatcaaccgcttcacgaaaacccatacacaacaaattaggatgaggatgaatacc 7123928  T
Q  297 agacttgtcttgttgagacaacaagtcattaaagtcaccaatgatacaccacggaagagatgacatatcccgcaactcccgaagtaaatcccaagcatca 396  Q
    ||  |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| || ||||||||||||||| |||||||||    
T  7123927 agttttgtcttgttgagacaacaagtcattaaagtccccaatgatacaccacagaatagatgacatatcccacagctcccgaagtaaatctcaagcatca 7123828  T
Q  397 cgactacgagcacgttcaggaaagccataataacaagttaatctccaatcaccagcttctttatcctccacaatcatattaatgaaatttcgagaataat 496  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||||||||||| ||| ||||    
T  7123827 cgacgacgagcacgttcaggaaagccataataacaagtcaatctccaatcaccagcttctttatcattcacaatcagattaatgaaatttcaagagtaat 7123728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 197 - 491
Target Start/End: Original strand, 43321375 - 43321670
Alignment:
Q  197 acgtaaatgggtgaccatgcaatttaatatcggataaggcacaatcatcaaccgcttcacggaaacccatacacaaccaattaggatgagg-atgaatac 295  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||  | ||||| ||||||||||||||||| ||||| ||||||||    
T  43321375 acgtaaatgggtgaccatccaatttaatatcagataatgcacaatcatcaaccgcttccagaaaacctatacacaaccaattagggtgagggatgaatac 43321474  T
Q  296 cagacttgtcttgttgagacaacaagtcattaaagtcaccaatgatacaccacggaagagatgacatatcccgcaactcccgaagtaaatcccaagcatc 395  Q
    |||  ||||||||||| |||||||||||||||||||| || ||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  43321475 cagctttgtcttgttgcgacaacaagtcattaaagtcccctatgatacaccacgaaagagatttcatatcccgcaactcccgaagtaaatcccaagcatc 43321574  T
Q  396 acgactacgagcacgttcaggaaagccataataacaagttaatctccaatcaccagcttctttatcctccacaatcatattaatgaaatttcgaga 491  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  43321575 acgacgacgggcacgttcaggaaagccataataacaagttaatctccagtcaccagcttctctatcctccacaatcagattgatgaaatttcgaga 43321670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 43321221 - 43321342
Alignment:
Q  68 gggacagtatcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttccca 167  Q
    |||||| ||||||| ||||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||    
T  43321221 gggacaatatcaagtagtattggagtgtgatctgaatgagaagtaagcaggtttgtaagtttgacttctggaaaacgttgcagccattcagggtttccca 43321320  T
Q  168 tagccatatccaatctttcttc 189  Q
    ||||||||||||||||||||||    
T  43321321 tagccatatccaatctttcttc 43321342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 7124177 - 7124057
Alignment:
Q  72 cagtatcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagc 171  Q
    |||||||||| | ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| | ||  |||||||| ||||||||||||||    
T  7124177 cagtatcaagcaatattggagtgtgatctgagtggaaagtaagcaggtttgtaagtttgacttctggaaagcatttcagccattcagagtttcccatagc 7124078  T
Q  172 catatccaatctttcttctag 192  Q
    |||||||||| ||||||||||    
T  7124077 catatccaatatttcttctag 7124057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 340 - 496
Target Start/End: Complemental strand, 24602369 - 24602213
Alignment:
Q  340 atacaccacggaagagatgacatatcccgcaactcccgaagtaaatcccaagcatcacgactacgagcacgttcaggaaagccataataacaagttaatc 439  Q
    ||||| || ||||||||||||||||||| ||||| || ||||||||| |||||||| |||  ||  |||||||||||||||||||||||| |||||||||    
T  24602369 atacaacatggaagagatgacatatcccacaactaccaaagtaaatctcaagcatcgcgatgacaggcacgttcaggaaagccataataaaaagttaatc 24602270  T
Q  440 tccaatcaccagcttctttatcctccacaatcatattaatgaaatttcgagaataat 496  Q
    ||||||||| ||| ||| ||||| ||||||| | ||||||||||||| |||| ||||    
T  24602269 tccaatcacgagcgtctctatcccccacaattaaattaatgaaattttgagagtaat 24602213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40589043 - 40589106
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    |||||||||| || |||||||||||||||| || || |||||| |||||||||||||| |||||    
T  40589043 cttgcactctgttatgcccgtgttgcacaaccggtggtgagggctgtttatgaacctcttgcca 40589106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 68 - 496
Target Start/End: Complemental strand, 27265570 - 27265147
Alignment:
Q  68 gggacagtatcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttccca 167  Q
    |||||| || |||| |||||| |||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||| | ||||||| |||||||||    
T  27265570 gggacaataacaagcagtattagagtgtgatctgagtgagaagcaagcaagtttgtaagtttgacttctgaaaaacgttgcatccattcgaagtttccca 27265471  T
Q  168 tagccatatccaatctttcttctagtactacgtaaatgggtgaccatgcaatttaatatcggataaggcacaatcatcaaccgcttcacggaaacccata 267  Q
    |||||||||||||| ||||||| || ||| ||   || ||| |||  |    |||||||| |||||||||||||||||||  |||||||||||||  |||    
T  27265470 tagccatatccaatatttcttcgagaact-cg---attggt-acccggactcttaatatcagataaggcacaatcatcaattgcttcacggaaactaata 27265376  T
Q  268 cacaaccaattaggatgaggatgaataccagacttgtcttgttgagacaacaagtcattaaagtcaccaatgatacaccacggaagagatgacatatccc 367  Q
    |||||||||||||||||| ||||||||||||  |||| ||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||| |||||||    
T  27265375 cacaaccaattaggatgatgatgaataccagctttgtgttgttgagacaacaaatcattaaagtccccaatgatacaccacgaaagtgatgatatatccc 27265276  T
Q  368 gcaactcccgaagtaaatcccaagcatcacgactacgagcacgttcaggaaagccataataacaagttaatctccaatcaccagcttctttatcctccac 467  Q
    | | ||| ||||||||||||||||||||||||  ||| |||||||||| ||| ||||||||||||||||||||| |||||| ||||||| |||||||||     
T  27265275 gtagctctcgaagtaaatcccaagcatcacgatgacgtgcacgttcagcaaaaccataataacaagttaatctctaatcactagcttctctatcctccat 27265176  T
Q  468 aatcatattaatgaaatttcgagaataat 496  Q
    ||||| |||||||||||||||||| ||||    
T  27265175 aatcagattaatgaaatttcgagagtaat 27265147  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 18345802 - 18345865
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    |||||||||||||||||||||||||||||| || || |||  | |||||||||||||| |||||    
T  18345802 cttgcactctattctgcccgtgttgcacaaccggtggtgaatgatgtttatgaacctcttgcca 18345865  T

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Target: scaffold0050 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 14311 - 14193
Alignment:
Q  75 tatcaagaagtattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacgttggagccattcggagtttcccatagccat 174  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||    
T  14311 tatcaagcaatattggagtgtgatcagagtgggaagtaagcaagtttgtaagtttgacttctggaaaacattgcagccattcagagtttcccatagccat 14212  T
Q  175 atccaatctttcttctagt 193  Q
    |||||||||||||||||||    
T  14211 atccaatctttcttctagt 14193  T

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Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 8387945 - 8387885
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctg 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8387945 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctg 8387885  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 41941065 - 41941128
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    |||||||||||||||||||||||||||||| || ||  |||||||||||||||||||| |||||    
T  41941065 cttgcactctattctgcccgtgttgcacaaccggtggcgagggttgtttatgaacctcttgcca 41941128  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30223127 - 30223184
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctc 58  Q
    ||||||||||||||||||||||||||||||  | || |||||| ||||||||||||||    
T  30223127 cttgcactctattctgcccgtgttgcacaactgttggtgagggctgtttatgaacctc 30223184  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4267970 - 4267907
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    |||||||||||||||||||||||||||||| ||||| |||  | | |||||||||||| |||||    
T  4267970 cttgcactctattctgcccgtgttgcacaaccgatggtgaacgatttttatgaacctcttgcca 4267907  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15989077 - 15989140
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    ||||||||||||| ||| |||||||||||| || |  ||| ||||||||||||||||| |||||    
T  15989077 cttgcactctattatgctcgtgttgcacaaccgctagtgaaggttgtttatgaacctcttgcca 15989140  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 34653921 - 34653972
Alignment:
Q  3 tgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaa 54  Q
    ||||||||||||||| ||||||||||||  | || |||||||||||||||||    
T  34653921 tgcactctattctgcacgtgttgcacaactggtgttgagggttgtttatgaa 34653972  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27533235 - 27533292
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctc 58  Q
    |||||||| ||||||| | ||||||||||| || || |||||| ||||||||||||||    
T  27533235 cttgcactatattctgtctgtgttgcacaaccggtggtgagggatgtttatgaacctc 27533292  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 22289100 - 22289040
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctg 61  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22289100 cttgcactctattctgcccgtgttgcacaaccgatgatgagggttgtttatgaacctcctg 22289040  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29201277 - 29201334
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctc 58  Q
    |||||||| |||| || ||||||||||||| ||||| |||||| ||||||||||||||    
T  29201277 cttgcactgtattttgtccgtgttgcacaaccgatggtgagggctgtttatgaacctc 29201334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 11745970 - 11746025
Alignment:
Q  2 ttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacct 57  Q
    ||||||||||||||| | ||||||||||| || || ||||||||||||||| ||||    
T  11745970 ttgcactctattctgtctgtgttgcacaaccggtggtgagggttgtttatgcacct 11746025  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 55199370 - 55199307
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    |||||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  55199370 cttgcactttattctgcatgtgttgcacaatcgatgatgagggctgtttatgaacctcctgcca 55199307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 466
Target Start/End: Original strand, 1046080 - 1046129
Alignment:
Q  417 aaagccataataacaagttaatctccaatcaccagcttctttatcctcca 466  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  1046080 aaagccataataacacgttaatctccaattaccagcttctctatcctcca 1046129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36310824 - 36310887
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    ||||||||||||| || |||||||||||||||  |  ||||||||||||||||||||| |||||    
T  36310824 cttgcactctattatggccgtgttgcacaatcagttgtgagggttgtttatgaacctcttgcca 36310887  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 42340609 - 42340667
Alignment:
Q  6 actctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgcca 64  Q
    |||||||||||| |||||||||||| || || |||||| |||||||||| ||| |||||    
T  42340609 actctattctgcacgtgttgcacaaccggtggtgagggctgtttatgaatctcttgcca 42340667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 53496903 - 53496846
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctc 58  Q
    |||||||||| ||||||||||||||||||| ||||| |||  | | ||||||||||||    
T  53496903 cttgcactctgttctgcccgtgttgcacaaccgatggtgaacgatttttatgaacctc 53496846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45 - 1
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggtt 45  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||    
T  45 cttgcagtctgttctgcccgtgttgcacaatcgatgacgagggtt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19364273 - 19364330
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctc 58  Q
    ||||||||| ||| ||| |||||||||||  || || |||||||||||||||||||||    
T  19364273 cttgcactcgattttgctcgtgttgcacatgcgttggtgagggttgtttatgaacctc 19364330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30802298 - 30802351
Alignment:
Q  1 cttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaa 54  Q
    |||||||||||||||||| ||||| ||||| || || |||||| ||||||||||    
T  30802298 cttgcactctattctgcctgtgttccacaaccgttggtgagggctgtttatgaa 30802351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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