View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4657_low_32 (Length: 238)
Name: NF4657_low_32
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_low_32 |
 | |
|
| [»] scaffold1248 (1 HSPs) |
| | |
|
| [»] scaffold0952 (1 HSPs) |
| | |
|
| [»] scaffold0717 (1 HSPs) |
| | |
|
| [»] scaffold1719 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 26077486 - 26077307
Alignment:
| Q |
42 |
ctgtccattatcaatgctttgaaaaagactaaaaggaattactcaggtgaacatgcattggggagccaagaggtgaatgcttacatgttttgtactgcgt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26077486 |
ctgtccattatcaatgctttgaaaaagactaaaaggaattactcaggtgaacatgcattggggagccaag-ggtgaatgcttacatgttttgtactgcgt |
26077388 |
T |
|
| Q |
142 |
gttcattatcaatgcaacgctgcctatatttattcctgcgtccattatggcattgcattatctgccaacttgcatgattgc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26077387 |
gttcattatcaatgcaacgctgcctatatttattcctgcgtccattatggcattgcattatctgccaacttacatgattgc |
26077307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26077555 - 26077512
Alignment:
| Q |
1 |
cactcattcataagctaccataaccaatcgacccatccaccctg |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26077555 |
cactcattcataagctaccataaccaatcgacccatccaccctg |
26077512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1248 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold1248
Description:
Target: scaffold1248; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 2036 - 2111
Alignment:
| Q |
49 |
ttatcaatgctttgaaaaagactaaaaggaattactcaggtgaacatgcatt-ggggagccaagaggtgaatgctt |
123 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
2036 |
ttatctatgctttgaaagagactaaaaggaattactcaggtggacatgcattgggggagccaagaggtgaatgctt |
2111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 277 - 202
Alignment:
| Q |
49 |
ttatcaatgctttgaaaaagactaaaaggaattactcaggtgaacatgcatt-ggggagccaagaggtgaatgctt |
123 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
277 |
ttatctatgctttgaaagagactaaaaggaattactcaggtggacatgcattgggggagccaagaggtgaatgctt |
202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 4301 - 4353
Alignment:
| Q |
71 |
taaaaggaattactcaggtgaacatgcattggggagccaagaggtgaatgctt |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4301 |
taaaaggaattactcaggtggacatgcattggggagccaagaggtgaatgctt |
4353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 20537051 - 20537122
Alignment:
| Q |
49 |
ttatcaatgctttgaaaaagactaaaaggaattactcaggtgaacatgcatt-ggggagccaagaggtgaat |
119 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| || ||||||||| |||| |||||||||||||| |
|
|
| T |
20537051 |
ttatctatgctttgaaagagactaaaaggaattactcagttggacatgcattgggggggccaagaggtgaat |
20537122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 20600311 - 20600357
Alignment:
| Q |
76 |
ggaattactcaggtgaacatgcattggggagccaagaggtgaatgct |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
20600311 |
ggaattactcaggtggacatgcattggggagccaagagatgaatgct |
20600357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1719 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1719
Description:
Target: scaffold1719; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 113 - 159
Alignment:
| Q |
76 |
ggaattactcaggtgaacatgcattggggagccaagaggtgaatgct |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
113 |
ggaattactcaggtggacatgcattggggagccaagagatgaatgct |
159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University