View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_low_4 (Length: 443)
Name: NF4657_low_4
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 52012772 - 52012368
Alignment:
| Q |
15 |
ctatccatctatgtaatcctcaaggtatgccgctcttaatcttatcattatcaatat-------catatac----tatgttattaattttgtatttatca |
103 |
Q |
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| T |
52012772 |
ctatccatctatgtaatcctcaaggtatgccgctcttaatcttatcattatcaatattcaatatcatatacgtactatgttattaattt-gtatttatca |
52012674 |
T |
|
| Q |
104 |
tgttaaaatatcaacatgtctcacacatacatttatttagtaaagatgaaaataataaataatttaatttaatgaagaagtttctgttatgcccaacaga |
203 |
Q |
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| T |
52012673 |
tgttaaaatatcaacatgtctcacacat----ttatttagtaaagatgaaaataataaataatttaatttaatgaagaagtttctgttatgcccaacaga |
52012578 |
T |
|
| Q |
204 |
aactacctctctctttcacactttatttctttggtactttcttccttctttttattatcattccaaagatgtgagcaattggaatttctccacccctcaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52012577 |
aactacctctctctttcacactttatttctttggtactttcttccttctttttattatcattccaaagatgtgagcaattggaatttctccacccctcaa |
52012478 |
T |
|
| Q |
304 |
tctttttggagcaaaatcctttatatcatcctctgttcttttattttcacatctcctgtgatctatatcaaaatcaaacaaactcattattgaataactt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52012477 |
tctttttggagcaaaatcctttatatcatcctctgttcttttattttcacatctcctgtgatctatatcaaaatcaaacaaactcattattgaataactt |
52012378 |
T |
|
| Q |
404 |
gtcagtgtaa |
413 |
Q |
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|||||||||| |
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| T |
52012377 |
gtcagtgtaa |
52012368 |
T |
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