View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_low_5 (Length: 423)
Name: NF4657_low_5
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 94 - 408
Target Start/End: Complemental strand, 47991870 - 47991556
Alignment:
| Q |
94 |
acccatttatgaaaaaaccataaagatcttaactttaattgattttaggaaatgggttatcnnnnnnngcttctgggtatgnnnnnnnggatgtacttgg |
193 |
Q |
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| T |
47991870 |
acccatttatgaaaaaaccataaagatcttaactttaattgattttaggaaatgggttatcaaaaaaagcttctgggtatgtttttttggatgtacttgg |
47991771 |
T |
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| Q |
194 |
taagcttcagtttcagcttcattggagtgaattgcataggattaggaaatgattcagctgtgaaaggggttgttgtaattcatggcaaagcttttattgg |
293 |
Q |
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| T |
47991770 |
taagcttcagtttcagcttcattggagtgaattgcataggattaggaaatgattcagctgtgaaaggggttgttgtaattcatggcaaagcttttattgg |
47991671 |
T |
|
| Q |
294 |
aaggattgataatgattttgtttgtgcaactcttgattggtggcctcctcagaaatgtgactggggaagatgcagttggggtcatgcttctcttcttaat |
393 |
Q |
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| T |
47991670 |
aaggattgataatgattttgtttgtgcaactcttgattggtggcctcctcagaaatgtgactggggaagatgcagttggggtcatgcttctcttcttaat |
47991571 |
T |
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| Q |
394 |
ctggtatagtttcat |
408 |
Q |
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| T |
47991570 |
ctggtatagtttcat |
47991556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 47991945 - 47991907
Alignment:
| Q |
17 |
aacctctgctactacagcagagtaacaaaacctcgactg |
55 |
Q |
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| T |
47991945 |
aacctctgctactacagcagagtaacaaaacctcgactg |
47991907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 22879730 - 22879619
Alignment:
| Q |
289 |
attggaaggattgataatgattttgtttgtgcaactcttgattggtggcctcctcagaaatgtgactggggaagatgcagttggggtcatgcttctcttc |
388 |
Q |
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||||||| |||||| |||||||| ||||||||||| | |||||||||||||||||||||||||| | || | ||| |||||||||| ||||||||||| |
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| T |
22879730 |
attggaaatattgatgatgattttatttgtgcaactttggattggtggcctcctcagaaatgtgattatggtacatgtagttggggtcttgcttctcttc |
22879631 |
T |
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| Q |
389 |
ttaatctggtat |
400 |
Q |
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| T |
22879630 |
tcaatctggtat |
22879619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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