View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4657_low_6 (Length: 420)

Name: NF4657_low_6
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4657_low_6
NF4657_low_6
[»] chr5 (11 HSPs)
chr5 (19-406)||(15807452-15807839)
chr5 (75-260)||(41859542-41859727)
chr5 (75-271)||(42629498-42629694)
chr5 (78-271)||(9575310-9575503)
chr5 (74-235)||(42840417-42840578)
chr5 (154-254)||(1040119-1040219)
chr5 (75-130)||(42637359-42637414)
chr5 (162-268)||(42637224-42637330)
chr5 (75-132)||(40545121-40545178)
chr5 (76-136)||(40549282-40549342)
chr5 (76-136)||(42413999-42414059)
[»] chr8 (2 HSPs)
chr8 (78-335)||(3367655-3367912)
chr8 (335-406)||(3367530-3367598)
[»] chr7 (2 HSPs)
chr7 (75-335)||(45866864-45867124)
chr7 (75-128)||(42446349-42446402)
[»] chr2 (2 HSPs)
chr2 (187-268)||(16921102-16921183)
chr2 (75-136)||(44937800-44937861)
[»] scaffold0129 (2 HSPs)
scaffold0129 (75-130)||(10487-10542)
scaffold0129 (75-169)||(33521-33615)
[»] chr6 (1 HSPs)
chr6 (75-170)||(29131320-29131415)
[»] chr3 (2 HSPs)
chr3 (75-130)||(5162456-5162511)
chr3 (335-399)||(53691512-53691573)


Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 15807839 - 15807452
Alignment:
Q  19 aatatataggtagtagtagttgatatttatcaaaaattaaactgaagaaatcaaaatttcacatatcaattttgggtgaagttgggttcaaagagtcatg 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807839 aatatataggtagtagtagttgatgtttatcaaaaattaaactgaagaaatcaaaatttcacatatcaattttgggtgaagttgggttcaaagagtcatg 15807740  T
Q  119 gaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagtta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807739 gaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagtta 15807640  T
Q  219 gtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807639 gtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttg 15807540  T
Q  319 aaagaaaaaacaattagttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatct 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807539 aaagaaaaaacaattagttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatct 15807452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 260
Target Start/End: Complemental strand, 41859727 - 41859542
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 174  Q
    ||||| |||||| |||| |||||||||||| | ||||||||||||| |||||||||  |||||||||| ||| | |   || | | |||||||||| ||     
T  41859727 tttcatatatcagttttaggtgaagttgggattaaagagtcatggatcaaactcttcgttgtaggtccgttgtccgatgttaagcgtcctattggagttg 41859628  T
Q  175 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggt 260  Q
    ||||||| || ||||| || ||| | ||||||||||||||  |||||| |||| ||||||||||||||||||| ||||| ||||||    
T  41859627 gtaagaaaggagatatgtttttccggaaaaaggataatgaactagttttgtttaatttaagcacccagagaattgaagaccttggt 41859542  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 271
Target Start/End: Complemental strand, 42629694 - 42629498
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 174  Q
    ||||| |||||||||||||||||||| ||  | || |||||||||| |||||| |||||||| ||||| ||| |  |  |||| |||||||||||| ||     
T  42629694 tttcatatatcaattttgggtgaagtcggagtgaaggagtcatggatcaaactttttattgtgggtccgttgacctgtgttgagcatcctattggagttg 42629595  T
Q  175 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtga 271  Q
    |||| || || ||||||| ||| | ||||||||||||  |  ||||||| ||| |||||| |||||| | ||| |||||||||||||| ||||||||    
T  42629594 gtaaaaatggtgatatatacttgaaaaaaaaggataacaaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtga 42629498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 271
Target Start/End: Complemental strand, 9575503 - 9575310
Alignment:
Q  78 cacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgta 177  Q
    ||||||||| |||||| | |||||||  | || |||||||||||||||||||| || |||| ||| |||       || | |||||||| ||| || |||    
T  9575503 cacatatcagttttggataaagttggaatgaaggagtcatggaccaaactcttcatcgtagatccgttgttctatgttaagcatcctataggagttggta 9575404  T
Q  178 agaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtga 271  Q
    | ||||| || |||||||| ||||||||||||||| | |||| | ||||| |||||| |||||||| ||| | |||||||||||||||||||||    
T  9575403 aaaagggtgacatattctttagaaaaaaggataatcaattagctaggtttaatttaatcacccagaaaattgtagagcttggtgttaaaggtga 9575310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 42840578 - 42840417
Alignment:
Q  74 atttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatt 173  Q
    ||||||||| ||||||||||||||| ||||  | ||||| |||||||| ||| |||||||||| ||||| || ||| || ||||  |||| ||||||       
T  42840578 atttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttgccttgagtatccaattggagca 42840479  T
Q  174 tgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaag 235  Q
     | ||||||||| |||||||  | | |||||| || |||||  ||| |||||||||||||||    
T  42840478 gggaagaagggcaatatattgattataaaaaaagacaatgaactagcttggtttgatttaag 42840417  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 1040219 - 1040119
Alignment:
Q  154 ttgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaaga 253  Q
    |||| |||||||||||| |  |||||||||  ||||||||||| |||||||| ||  |||| |||||||||||| | |||||||| || ||||| |||||    
T  1040219 ttgagcatcctattggagtcggtaagaaggaagatatattctttagaaaaaacgacgatgaattagtttggtttaacttaagcactcaaagaattgaaga 1040120  T
Q  254 g 254  Q
    |    
T  1040119 g 1040119  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 42637414 - 42637359
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 130  Q
    |||||||||||||||||||||||||| ||| | || || |||||||||||||||||    
T  42637414 tttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactctt 42637359  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 268
Target Start/End: Complemental strand, 42637330 - 42637224
Alignment:
Q  162 cctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtg 261  Q
    ||||||||| |  ||||||| || ||||||||||| |||||||| ||| ||||  ||||||| ||| ||||||| || || |||||| || |  ||||||    
T  42637330 cctattggagtgagtaagaatggtgatatattctttagaaaaaacgatgatgaactagtttgctttaatttaagtacacaaagaatccaacaatttggtg 42637231  T
Q  262 ttaaagg 268  Q
    |||||||    
T  42637230 ttaaagg 42637224  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 40545121 - 40545178
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactcttta 132  Q
    |||||||||||||||||||||||||||||  | || || ||||||| |||||| ||||    
T  40545121 tttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaacttttta 40545178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 40549282 - 40549342
Alignment:
Q  76 ttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 136  Q
    ||||||||||||||||||||||||| ||  | || || ||||||| |||||||||| ||||    
T  40549282 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgt 40549342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 42413999 - 42414059
Alignment:
Q  76 ttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 136  Q
    ||||||| ||||||||||| ||| ||||  | || ||||||||||| ||||||||||||||    
T  42413999 ttcacatttcaattttgggcgaatttggtgtaaaggagtcatggactaaactctttattgt 42414059  T

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Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 78 - 335
Target Start/End: Complemental strand, 3367912 - 3367655
Alignment:
Q  78 cacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgta 177  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||| | |    
T  3367912 cacatatcaattttaggtgaagttggggtcaaagagtcatggaccaaactctttattgtaggtcctatgcgtgacattgaacatcctattggtattggca 3367813  T
Q  178 agaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatg 277  Q
    |||||||||||||||||||||||||||| |||||||||  | |||| ||  ||||||||||| ||||||| |||||||||||||||||||||| ||  ||    
T  3367812 agaagggcgatatattcttcagaaaaaaagataatgagcaaatttgtttaaatttaagcacctagagaattgaagagcttggtgttaaaggtggcttgtg 3367713  T
Q  278 ttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattag 335  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3367712 ttgccggataatgatttataaggaaagccttctgccgcttgaaagaaaaaacaattag 3367655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 3367598 - 3367530
Alignment:
Q  335 gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatct 406  Q
    ||||||||||| ||| | ||||||||||||   |||| |||||||||||| ||||||||||||||| |||||    
T  3367598 gttttattttagtttttactttgtgagcat---aatgatatggcaatacatcattactgatattggttatct 3367530  T

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Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 75 - 335
Target Start/End: Original strand, 45866864 - 45867124
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 174  Q
    ||||||||||||||||| |||||| ||||  | || |||||||||| |||||| |||||||| ||| ||||| || |  | || ||||||||| |||||     
T  45866864 tttcacatatcaattttaggtgaaattggagtgaaggagtcatggatcaaactttttattgtgggttctttgtcttgtgtcgaccatcctattagaattg 45866963  T
Q  175 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactc 274  Q
    |||||| ||| ||||||||||| |||||| | ||| ||||  ||||||  ||| |||||||||| |||| ||| ||||||||||||||||||||| | ||    
T  45866964 gtaagacgggtgatatattctttagaaaagaagatgatgaactagtttcatttaatttaagcacacagaaaattgaagagcttggtgttaaaggttattc 45867063  T
Q  275 atgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattag 335  Q
    |  ||||| ||||||  ||||||||||||||||||||||| |||  ||||  |||||||||    
T  45867064 actttgccagataatagtttataaggaaagccttctaccgattgccagaatcaacaattag 45867124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 42446349 - 42446402
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactc 128  Q
    |||||||||||||||||||||||| |||   |||| || |||||||||||||||    
T  42446349 tttcacatatcaattttgggtgaacttgctatcaaggaatcatggaccaaactc 42446402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 16921102 - 16921183
Alignment:
Q  187 atatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaagg 268  Q
    ||||||||||||||||| | ||||||||  |||| ||||||||||| |  ||||| |  || ||||||||||||||||||||    
T  16921102 atatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaagg 16921183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 44937861 - 44937800
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 136  Q
    |||||||||||||||||||||||| | ||  | ||||| |||||||| ||||||||| ||||    
T  44937861 tttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgt 44937800  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 10487 - 10542
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 130  Q
    |||||||||||||||||||||||||||||  | || ||||| ||||| ||||||||    
T  10487 tttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 10542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 33615 - 33521
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattgg 169  Q
    |||||||| || |||||||||||| ||||  | || ||||| ||||| |||||||||||| | || ||||| ||| |||| || |||||||||||    
T  33615 tttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggcctttaccttgcatcgagcatcctattgg 33521  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 29131320 - 29131415
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattgga 170  Q
    |||||||||||||||||||||||| ||||  | ||||| || ||||||||  |||| ||||| || || ||| ||||| |||| | ||||||||||    
T  29131320 tttcacatatcaattttgggtgaatttggcataaaagaatcgtggaccaagatcttcattgttggaccattgtctggcgttgagcgtcctattgga 29131415  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 5162456 - 5162511
Alignment:
Q  75 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 130  Q
    |||||||||||||||||||||||||||||  | || || ||||||| |||||||||    
T  5162456 tttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactctt 5162511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 53691512 - 53691573
Alignment:
Q  335 gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattg 399  Q
    ||||||||||| ||||| ||||||||||||   | || ||| |||||||||||||||||||||||    
T  53691512 gttttattttagtttctactttgtgagcat---attggtattgcaatacaccattactgatattg 53691573  T

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