View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4657_low_8 (Length: 410)

Name: NF4657_low_8
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4657_low_8
NF4657_low_8
[»] chr3 (11 HSPs)
chr3 (21-410)||(24358457-24358845)
chr3 (29-229)||(24364625-24364829)
chr3 (52-227)||(24369844-24370020)
chr3 (264-410)||(24370017-24370163)
chr3 (285-407)||(24364419-24364541)
chr3 (29-200)||(24354803-24354974)
chr3 (27-132)||(24344529-24344634)
chr3 (281-410)||(24355617-24355741)
chr3 (281-410)||(24362479-24362608)
chr3 (49-191)||(24351741-24351880)
chr3 (16-61)||(24313955-24314000)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 21 - 410
Target Start/End: Original strand, 24358457 - 24358845
Alignment:
Q  21 tttgaccggaatgcagtagaaatagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattt 120  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24358457 tttggccggaatgcagtagaaatagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattt 24358556  T
Q  121 tggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattt 219  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  24358557 tggacgaatggcttaattggaagaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattt 24358656  T
Q  220 tcttttcagtgtgcatatatataatacataatggattgatgctcttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgaga 319  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||| |||||||||||||||||||||||    
T  24358657 tcttttcagtgt--acatatataatacataatggattgatgctcttcaagagtttcttctttgatttacattgcacgcatatatgcaggtgatgatgaga 24358754  T
Q  320 agacttctaaaagaacttcatcaataaattggccaaaggatgttagagctcaggaagttgctcaaaatttaatctcatgcaatcctttttt 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||  ||||||||||||    
T  24358755 agactactaaaagaacttcatcaataaattggccaaaggatgttagagctcagaaagtagctcaaaatttcatctcaaacaatcctttttt 24358845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 24364829 - 24364625
Alignment:
Q  29 gaatgcagtagaaatagattat---tcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggat 125  Q
    ||||||||||||||||||||||   |||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24364829 gaatgcagtagaaatagattatgattcttcaagtgacactaatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggat 24364730  T
Q  126 gaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttt 224  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24364729 gaatggcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttcttt 24364630  T
Q  225 tcagt 229  Q
    |||||    
T  24364629 tcagt 24364625  T

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Target: chr3; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 24369844 - 24370020
Alignment:
Q  52 cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  24369844 cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctag 24369943  T
Q  152 acaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttca 227  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  24369944 acaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttcttttca 24370020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 264 - 410
Target Start/End: Original strand, 24370017 - 24370163
Alignment:
Q  264 ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaaggatgtt 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  24370017 ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagactactaaaagaacttcatcaatgaattggccaaaggatgtt 24370116  T
Q  364 agagctcaggaagttgctcaaaatttaatctcatgcaatcctttttt 410  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||    
T  24370117 agagctcaggaagttgctcaaaatttcatctcatgcaatccattttt 24370163  T

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Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 285 - 407
Target Start/End: Complemental strand, 24364541 - 24364419
Alignment:
Q  285 ttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaaggatgttagagctcaggaagttgctcaa 384  Q
    ||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| ||| ||| ||||||||||||||| ||||||    
T  24364541 ttacattgcacacatatatgcaggagatcatgagaagactactaaaagaacttcatcaataaactggccgaagaatgctagagctcaggaagtagctcaa 24364442  T
Q  385 aatttaatctcatgcaatccttt 407  Q
    ||||| |||||||||||||||||    
T  24364441 aatttcatctcatgcaatccttt 24364419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 24354803 - 24354974
Alignment:
Q  29 gaatgcagtagaaatagattatt---cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggat 125  Q
    |||||||||||||||||| |||    ||||||||||  || ||||||| ||  |  || |||||||||||||||||||    || ||||||||||||||     
T  24354803 gaatgcagtagaaatagactatgatccttcatgtgatggttatgatgagaaaaatgatattgatcatagtgatgatgag---tctgttgagattttggaa 24354899  T
Q  126 gaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgaggt 200  Q
    ||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  24354900 gaatggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctcataagaaagttagaggt 24354974  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 24344529 - 24344634
Alignment:
Q  27 cggaatgcagtagaaatagattatt---cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttgg 123  Q
    |||||||||||||||||||| |||    |||||||||||| ||||||||||||||||||||||| ||||||||||||||   |||||||||||||||| |    
T  24344529 cggaatgcagtagaaatagactatgatacttcatgtgacactgatgatgaaaatgacaatgttggtcatagtgatgatg---aatcagttgagattttag 24344625  T
Q  124 atgaatggc 132  Q
    |||||||||    
T  24344626 atgaatggc 24344634  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 410
Target Start/End: Original strand, 24355617 - 24355741
Alignment:
Q  281 tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaa-aggatgttagagctcaggaagttg 379  Q
    ||||||| ||| |||||||||||||||||||   | |||| ||| |||||||||||||||||     |||||||| |||| | ||||||||||||||| |    
T  24355617 tgttttatattccacacatatatgcaggtgagattaagaaaactgctaaaagaacttcatca-----ttggccaagagga-gctagagctcaggaagtag 24355710  T
Q  380 ctcaaaatttaatctcatgcaatcctttttt 410  Q
    |||||||||| ||||||||||||||||||||    
T  24355711 ctcaaaatttcatctcatgcaatcctttttt 24355741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 410
Target Start/End: Original strand, 24362479 - 24362608
Alignment:
Q  281 tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaaggatgttagagctcaggaagttgc 380  Q
    ||||||| |||||||||||||||||||||||   | |||||||| || |||||||| ||||| | |||||||| | ||  | ||||||||  ||||| ||    
T  24362479 tgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcctatgggagctagagctcgagaagtagc 24362578  T
Q  381 tcaaaatttaatctcatgcaatcctttttt 410  Q
    |  ||| || |||||| |||||||||||||    
T  24362579 tgcaaaattcatctcaagcaatcctttttt 24362608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 24351741 - 24351880
Alignment:
Q  49 attcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggc 148  Q
    ||||||||||||||| ||||||||||||||  ||||||| ||| |   |||| ||| ||||| |||||||||  ||||||||||  |||| |||||  ||    
T  24351741 attcttcatgtgacactgatgatgaaaatggaaatgttggtcaaa---atgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgc 24351837  T
Q  149 taaacaaagatcaccttttgtttctcctcgaccacataagaaa 191  Q
    || | ||||  |||| ||  ||| |||||||||||||||||||    
T  24351838 tagaaaaaggccaccattattttatcctcgaccacataagaaa 24351880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 24313955 - 24314000
Alignment:
Q  16 tcatatttgaccggaatgcagtagaaatagattattcttcatgtga 61  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||||    
T  24313955 tcatacttgaccagaatgcactagaaatagattattcttcatgtga 24314000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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