View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4657_low_9 (Length: 401)

Name: NF4657_low_9
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4657_low_9
NF4657_low_9
[»] chr1 (12 HSPs)
chr1 (1-383)||(17810372-17810754)
chr1 (1-176)||(35900325-35900500)
chr1 (1-175)||(11543153-11543327)
chr1 (1-176)||(44613887-44614062)
chr1 (1-60)||(44146311-44146370)
chr1 (287-383)||(35900124-35900220)
chr1 (281-352)||(44146048-44146119)
chr1 (288-383)||(44613750-44613845)
chr1 (77-176)||(44794352-44794451)
chr1 (288-383)||(44794493-44794588)
chr1 (86-135)||(44146259-44146308)
chr1 (253-383)||(11543399-11543529)
[»] scaffold0061 (2 HSPs)
scaffold0061 (1-175)||(27858-28032)
scaffold0061 (258-383)||(28106-28231)
[»] scaffold0017 (4 HSPs)
scaffold0017 (1-175)||(170760-170934)
scaffold0017 (1-181)||(181841-182021)
scaffold0017 (276-382)||(181649-181755)
scaffold0017 (258-383)||(170561-170686)
[»] chr3 (3 HSPs)
chr3 (1-176)||(26729504-26729679)
chr3 (276-383)||(26729297-26729404)
chr3 (298-383)||(8343704-8343789)
[»] chr2 (4 HSPs)
chr2 (1-176)||(29227582-29227757)
chr2 (1-176)||(29340881-29341056)
chr2 (278-381)||(29227856-29227959)
chr2 (278-381)||(29341155-29341258)
[»] chr5 (2 HSPs)
chr5 (253-382)||(29506490-29506619)
chr5 (1-147)||(29506235-29506381)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 17810372 - 17810754
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17810372 ttcctatgtttgaaatgacttccccactgagattgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcagctggtatgtcccctgt 17810471  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttccacgtcaggaacgaggtaaaatcataa 200  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17810472 aagatggttgcttgaaagatcaatgctttttaaaaacacatcagcatctttgtaaggttggtctacacctttccacgtcaggaacgaggtgaaatcataa 17810571  T
Q  201 aatatttcgaaagataaagtagccgcactgaacatatacccatgattcttccatgaagttgagttcacggtgtcttgagtcattgcagtaaaattcatta 300  Q
     ||||||| ||| || ||||||||| |||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17810572 tatatttccaaaaatgaagtagccgtactgattgtatacccatgattcttcgatgaagttgagttcacggtgtcttgagtcattgcagtaaaattcatta 17810671  T
Q  301 cacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagttttctcaaataacatacatttgaaggt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17810672 cacaagttgggattcctcctgataagttatttagtgacagatccaatactcgaagttttctcaaataacatacatttgaaggt 17810754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 35900500 - 35900325
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    |||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||    
T  35900500 ttcctatgttcggaatgatttccccactgagattgttcctcgacaaatttaaggaaatcaaaccaaataagtactccatttcaactggtatttcccctgt 35900401  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttccac 176  Q
    ||||||||||||||| ||||||||  ||||||||||| ||| || || | ||||| |||||||||| |||||||||    
T  35900400 aagatggttgcttgaaagatcaattgtttttaaaaacctataaggatttatgtaaagttggtctacccctttccac 35900325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 11543153 - 11543327
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    |||||||||||| ||| |||| |||||||||| |||| |||||||||||||| |||||||||||||  || ||||||||||| | |||||| ||||||||    
T  11543153 ttcctatgtttgcaattattttcccactgagattgtttcttgacaaatttaatgaaatcaatccaattaaatactcaatttccattggtatttcccctgt 11543252  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttcca 175  Q
    ||||||||||||||| | ||||||||||||||||| | |||| |||| |||||| ||||| ||||||||||||||    
T  11543253 aagatggttgcttgacatatcaatgctttttaaaagcctatctgcatttctgtagggttgatctacacctttcca 11543327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 44614062 - 44613887
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| | || |||   |||||| ||||| ||    
T  44614062 ttcctatgtttgaaatgatttccccactgagattgttccttgacaaatttaaggaaatcaatccaattaagtattgaacttccgatggtatttccccagt 44613963  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttccac 176  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||| | || |   |||||| ||||||||||||    
T  44613962 aagatggttgcttgagagatcaatggtttttaaaaacttatctgcatttttgaagtcttggtccacacctttccac 44613887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44146370 - 44146311
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatca 60  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44146370 ttcctatgtttgaaatgatttccccactgagattgttccttgacaaatttaaggaaatca 44146311  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 383
Target Start/End: Complemental strand, 35900220 - 35900124
Alignment:
Q  287 agtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagttttctcaaataacatacatttgaaggt 383  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||| ||||||| ||| || || ||||| |||||||||||||| | ||||||||||    
T  35900220 agtaagattctttacacaagttgggattcctcctgataagctattaagtgacaaatctaagacatgaagatttctcaaataacagagatttgaaggt 35900124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 44146119 - 44146048
Alignment:
Q  281 cattgcagtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttg 352  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  44146119 cattgaagtaaaattatttacacaagttgggattcctcctgataagctatttagtgacagatccaagacttg 44146048  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 383
Target Start/End: Complemental strand, 44613845 - 44613750
Alignment:
Q  288 gtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagttttctcaaataacatacatttgaaggt 383  Q
    ||||||||  ||| |||||||||||||| |||||||| ||| || ||||||| |||||| |||||||||||| |||| ||||| | ||||||||||    
T  44613845 gtaaaattgtttatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagatttgaaggt 44613750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 44794352 - 44794451
Alignment:
Q  77 aatttcaactggtatgtcccctgtaagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttccac 176  Q
    |||||||  |||||| || |||||||||||||||||||||||||||||| ||||||||||| |||| |||| | || |   |||||| ||||||||||||    
T  44794352 aatttcagttggtatttcgcctgtaagatggttgcttgagagatcaatggtttttaaaaacttatctgcatttttgaagtcttggtccacacctttccac 44794451  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 44794493 - 44794588
Alignment:
Q  288 gtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagttttctcaaataacatacatttgaaggt 383  Q
    ||||||||  ||| |||||||||||||| |||||||| ||| || ||||||| |||||| |||||||||||| |||| ||||| | ||||||||||    
T  44794493 gtaaaattgtttatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagatttgaaggt 44794588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 44146308 - 44146259
Alignment:
Q  86 tggtatgtcccctgtaagatggttgcttgagagatcaatgctttttaaaa 135  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  44146308 tggtatttaccctgtaagatggttgcttgagagatcaatggtttttaaaa 44146259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 383
Target Start/End: Original strand, 11543399 - 11543529
Alignment:
Q  253 atgaagttgagttcacggtgtcttgagtcattgcagtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttg 352  Q
    ||||||||||||||| |||||||  || ||| |  ||||||||  ||||||| |  || | ||||||||||||| |||||||||||| ||| || |  ||    
T  11543399 atgaagttgagttcatggtgtctacagccatcgatgtaaaattgtttacacatggcggaagtcctcctgataagctatttagtgacatatctaagatatg 11543498  T
Q  353 aagttttctcaaataacatacatttgaaggt 383  Q
     |||||||| |||||||| | ||||||||||    
T  11543499 cagttttcttaaataacagagatttgaaggt 11543529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 27858 - 28032
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||| ||||||  |||||| ||||||||    
T  27858 ttcctatgtttaaaatgatttccccactgagattgttccttgacaaatttaatgaaatcaaaccaaataagtactccatttcagttggtatttcccctgt 27957  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttcca 175  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||| | ||||   ||||||||||||||||||    
T  27958 aagatggttgcttgagagatcaatggtttttaaaaacttatctgcatttttgtaccattggtctacacctttcca 28032  T

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Target: scaffold0061; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 383
Target Start/End: Original strand, 28106 - 28231
Alignment:
Q  258 gttgagttcacggtgtcttgagtcattgcagtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagtt 357  Q
    |||||| ||| |||||| |||| ||||| ||| |||||  |||||||||| ||||||||||||||||| ||||||||||||| ||| || || |||||||    
T  28106 gttgagctcatggtgtcctgagccattgaagttaaattgtttacacaagtggggattcctcctgataaattatttagtgacatatctaagacatgaagtt 28205  T
Q  358 ttctcaaataacatacatttgaaggt 383  Q
    || |||||||||||| ||||||||||    
T  28206 ttgtcaaataacatagatttgaaggt 28231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 170934 - 170760
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||| ||||||  |||||| ||||||||    
T  170934 ttcctatgtttaaaatgatttccccactgagattgttccttgacaaatttaatgaaatcaaaccaaataagtactccatttcagttggtatttcccctgt 170835  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttcca 175  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||| | ||||   ||||||||||||||||||    
T  170834 aagatggttgcttgagagatcaatggtttttaaaaacttatctgcatttttgtaccattggtctacacctttcca 170760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 182021 - 181841
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| |||  ||||| |  ||||||  |||||| ||||||||    
T  182021 ttcctatgtttgaaatgatttccccacggagattgttccttgacaaatttaatgaaatcaatgcaactaagtattgcatttcagttggtatttcccctgt 181922  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttccacgtcag 181  Q
    ||||| ||||||||||||||||||  ||||||||||| |||| |||| | ||||  ||  |||| ||||||||||| ||||    
T  181921 aagattgttgcttgagagatcaatcgtttttaaaaacttatctgcatttttgtaccgtctgtctgcacctttccacatcag 181841  T

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Target: scaffold0017; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 382
Target Start/End: Complemental strand, 181755 - 181649
Alignment:
Q  276 tgagtcattgcagtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagttttctcaaataacatacat 375  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||  ||||||||||| || ||||||||| |||||||||| | ||    
T  181755 tgagtcattgaagtaaaattctttacacaagttgggattcctcctgataagctatttacggacagatccaagacatgaagttttgtcaaataacagagat 181656  T
Q  376 ttgaagg 382  Q
    |||||||    
T  181655 ttgaagg 181649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 383
Target Start/End: Complemental strand, 170686 - 170561
Alignment:
Q  258 gttgagttcacggtgtcttgagtcattgcagtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagtt 357  Q
    |||||| ||| |||||| |||| ||||| ||| |||||  |||||||||| ||||||||||||||||| ||||||||||||| ||| || || |||||||    
T  170686 gttgagctcatggtgtcctgagccattgaagttaaattgtttacacaagtggggattcctcctgataaattatttagtgacatatctaagacatgaagtt 170587  T
Q  358 ttctcaaataacatacatttgaaggt 383  Q
    || |||||||||||| ||||||||||    
T  170586 ttgtcaaataacatagatttgaaggt 170561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 26729679 - 26729504
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    |||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||  || ||||| ||||||  |||||| ||||||      
T  26729679 ttcctatgtttgaaattatttccccactaagattgttccttgacaaatttaaggaaatcaatccaactaaatactccatttcagttggtatttcccctaa 26729580  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttccac 176  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||| | |||| ||||||||| |||||||||||    
T  26729579 aagatagttgcttgagagatcaatgctttttaaaaacatatctgcatttttgtagggttggtcttcacctttccac 26729504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 383
Target Start/End: Complemental strand, 26729404 - 26729297
Alignment:
Q  276 tgagtcattgcagtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagttttctcaaataacatacat 375  Q
    |||||||| | |||||||||  | ||||| ||||||||||||||||||||||||||||| || |||||||| |||  ||| |||||||||||||| | ||    
T  26729404 tgagtcatggaagtaaaattactcacacatgttgggattcctcctgataagttatttagggaaagatccaagactctaaggtttctcaaataacaaatat 26729305  T
Q  376 ttgaaggt 383  Q
    ||||||||    
T  26729304 ttgaaggt 26729297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 383
Target Start/End: Complemental strand, 8343789 - 8343704
Alignment:
Q  298 ttacacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagttttctcaaataacatacatttgaaggt 383  Q
    ||||||| | ||| || |||||||||||||||||||| ||||||||||| || |||||||||||||||||||| | ||||||||||    
T  8343789 ttacacatggtggaatccctcctgataagttatttagcgacagatccaagacatgaagttttctcaaataacaaagatttgaaggt 8343704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 29227582 - 29227757
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    ||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||||||||||| |||  ||  ||||||  |||||| ||||| ||    
T  29227582 ttcctatgtttgaaatgatttccacgctgagattgttccttgacaaatttaaggcaatcaatccaaataagcgcttcatttcagttggtatttcccccgt 29227681  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttccac 176  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||| |||||| |||||||||||||    
T  29227682 aagatggttgcttgagagatcaatggtttttaaaaacctatcagcatttttgtaacgttggtttacacctttccac 29227757  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 29340881 - 29341056
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    ||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||||||||||| |||  ||  ||||||  |||||| ||||| ||    
T  29340881 ttcctatgtttgaaatgatttccacgctgagattgttccttgacaaatttaaggcaatcaatccaaataagcgcttcatttcagttggtatttcccccgt 29340980  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcatctctgtaaggttggtctacacctttccac 176  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||| |||||| |||||||||||||    
T  29340981 aagatggttgcttgagagatcaatggtttttaaaaacctatcagcatttttgtaacgttggtttacacctttccac 29341056  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 278 - 381
Target Start/End: Original strand, 29227856 - 29227959
Alignment:
Q  278 agtcattgcagtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagttttctcaaataacatacattt 377  Q
    |||||||| |||||||||| | ||||| | ||| ||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||| | ||||    
T  29227856 agtcattgaagtaaaattcttaacacatgatggaattcctcctgagaagctatttagtgacagatctaatacttgaagttctctcaaataacagagattt 29227955  T
Q  378 gaag 381  Q
    ||||    
T  29227956 gaag 29227959  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 278 - 381
Target Start/End: Original strand, 29341155 - 29341258
Alignment:
Q  278 agtcattgcagtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttgaagttttctcaaataacatacattt 377  Q
    |||||||| |||||||||| | ||||| | ||| ||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||| | ||||    
T  29341155 agtcattgaagtaaaattcttaacacatgatggaattcctcctgagaagctatttagtgacagatctaatacttgaagttctctcaaataacagagattt 29341254  T
Q  378 gaag 381  Q
    ||||    
T  29341255 gaag 29341258  T

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Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 253 - 382
Target Start/End: Original strand, 29506490 - 29506619
Alignment:
Q  253 atgaagttgagttcacggtgtcttgagtcattgcagtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatacttg 352  Q
    ||||||||||||||| |||| | |||| ||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||| |||||    
T  29506490 atgaagttgagttcatggtgccctgagccattgaagtaaaattctttacacatgttgggattcctcctgataagctatttagtgacaaatccaagacttg 29506589  T
Q  353 aagttttctcaaataacatacatttgaagg 382  Q
    ||||| ||||||||||||||  ||||||||    
T  29506590 aagttctctcaaataacataggtttgaagg 29506619  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 29506235 - 29506381
Alignment:
Q  1 ttcctatgtttgaaatgatttccccactgagaatgttccttgacaaatttaaggaaatcaatccaaacaagtactcaatttcaactggtatgtcccctgt 100  Q
    ||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||  |||||||||  ||||||||||||||   |||||| || ||| |    
T  29506235 ttcctatgtctgaaattatttccccactaagattgttccttgacaaatttaaggatgtcaatccaagtaagtactcaatttctgttggtatttctcctat 29506334  T
Q  101 aagatggttgcttgagagatcaatgctttttaaaaacatatcagcat 147  Q
    ||| ||||||||||||||||||||||| ||||||||| |||| ||||    
T  29506335 aaggtggttgcttgagagatcaatgctgtttaaaaacttatctgcat 29506381  T

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