View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-1 (Length: 1020)
Name: NF4658-Insertion-1
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 788; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 82 - 997
Target Start/End: Complemental strand, 23345232 - 23344325
Alignment:
| Q |
82 |
tagtccttacattgcagcaccgtaataactatagaagatccttgtcaaatatacgaaatagaatcttctacaattgcagtacagtgctgcagctgtaagg |
181 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23345232 |
tagtccttacattgcagcaccgtaataactatagaagatccttgtcaaatatacgaaatagaatcttctacaattgcagtaaagtgctgcagctgtaagg |
23345133 |
T |
|
| Q |
182 |
actattaaatttatagagaaattttatctctctaaatctaatagtctccactaccgctgccatagagtattcaagtccttgctcagataggctgatgcag |
281 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23345132 |
actattaaatttatagagaaattttatctctctaaatctaatagtctccactaccgctgccatagaggattcaagtccttgctcagataggctgatgcag |
23345033 |
T |
|
| Q |
282 |
tgatgaacaagattgcattgtggcctcagagtcgcagtgacataaaaattgcggtgtctggtcttagtttggcgtcgcatacttttccttatgtattttt |
381 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23345032 |
tgatgaacaagattgcgttgtggcctcagagtcgcagtgacataaaaattgcggtgtctggtcttagtttggcgtcgcatacttttccttatgtattttt |
23344933 |
T |
|
| Q |
382 |
atgaaagttcttgaatagatttggttttgaatttctatggttactcaagtttcatagacgtagctatgtgtgatgattgcagatggtcaagaattgctag |
481 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344932 |
atgaaaattattgaatagatttggttttgaatttctatggttactcaagtttcatagacgtagctatgtgtgatgattgcagatggtcaagaattgctag |
23344833 |
T |
|
| Q |
482 |
aaaactacctggaagaacagacaatgagattaagaattactggaggacacacatgagaaaaaagagggcacaagagaaaaaacacgcaacaccttcgatt |
581 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23344832 |
aaaactacctggaagaacagacaatgagattaagaattactggaggacacacatgagaaaaaagagggcacaagagaaaaaacacgcaacaccttcgatt |
23344733 |
T |
|
| Q |
582 |
tcatcatcacctgatcaatcttctagttggtcaatcctcacatttctcaaatagtaaccatggtgtggattcacatgctttccaacaaagagtctgaaga |
681 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23344732 |
tcatcatcacctgatcaatcttctagtt-gtcaatcctcacatttctcaaatagtaaccatggtgtggattcacatgc-ttccaacaaagagtctgaaga |
23344635 |
T |
|
| Q |
682 |
agaaaattaccaagtacaagaaatttgaacaaggggtactcaatggatgatatatggagagatattgctatgtctgaagatgacatcaatgttcttcaac |
781 |
Q |
| |
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||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344634 |
agaaaattaccaagtccaagaaa-ttgaacaa-gggtactcaatggatgatatatggaaagatattgctatgtctgaagatgacatcaatgttcttcaac |
23344537 |
T |
|
| Q |
782 |
ctgattttgatggaactagtgaagagaatagtaataatttatcttgtcctataatgccttctacatcatcatgggattattcatatttagatccattgtg |
881 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23344536 |
ctgattttgatggaactagtgaagagaatagcaataatttatcttgtcctataatgccttctacatcatcatgggattattcatatttagatccattgtg |
23344437 |
T |
|
| Q |
882 |
ggtgatggatgaagaagaaagcaagatgttatttccctcctaatggtgaacaatattttttccttccatgatccaacagggaaccccatttttaactggt |
981 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||||| ||||| ||||| || | | ||||| |||||||| |
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| T |
23344436 |
ggtgatggatgaagaagaaagcaagatgtta-ttccctcctattggtgaccaata-tttttccttctatgat-caacaagggaacacatttctaactggt |
23344340 |
T |
|
| Q |
982 |
taaatcaagattattc |
997 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
23344339 |
t-aatcaagattattc |
23344325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 23345342 - 23345268
Alignment:
| Q |
7 |
acatctcatgtcaatcataatttgattggattctcgacgacggctgcaatatggtgctcaaacagtaaggacggttag |
84 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
23345342 |
acatctcatgtcaatcataattggattggattctcgacg---gctgcaatatggtgctcaaacagtaaggacggttag |
23345268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 459 - 538
Target Start/End: Complemental strand, 41174716 - 41174637
Alignment:
| Q |
459 |
tgcagatggtcaagaattgctagaaaactacctggaagaacagacaatgagattaagaattactggaggacacacatgag |
538 |
Q |
| |
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||||| |||||| |||||||| | || ||||||||| |||| || |||||||| |||||||||||||| || |||||||| |
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| T |
41174716 |
tgcaggtggtcacgaattgctcgcaagctacctggacgaacggataatgagatcaagaattactggagaactcacatgag |
41174637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 461 - 525
Target Start/End: Original strand, 33695822 - 33695886
Alignment:
| Q |
461 |
cagatggtcaagaattgctagaaaactacctggaagaacagacaatgagattaagaattactgga |
525 |
Q |
| |
|
|||||||||| |||||||| | | ||||||||||||||||| |||||||| ||||||| ||||| |
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|
| T |
33695822 |
cagatggtcagcaattgctacacatctacctggaagaacagataatgagataaagaatttctgga |
33695886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 17118307 - 17118243
Alignment:
| Q |
465 |
tggtcaagaattgctagaaaactacctggaagaacagacaatgagattaagaattactggaggac |
529 |
Q |
| |
|
||||||| |||||| |||| |||| ||||||||||||||||| || ||||||||||||||||| |
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|
| T |
17118307 |
tggtcaacaattgcaagaagtttaccaggaagaacagacaatgaaataaagaattactggaggac |
17118243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 484 - 517
Target Start/End: Complemental strand, 45594331 - 45594298
Alignment:
| Q |
484 |
aactacctggaagaacagacaatgagattaagaa |
517 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
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|
| T |
45594331 |
aactaccaggaagaacagacaatgagattaagaa |
45594298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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