View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-10 (Length: 563)
Name: NF4658-Insertion-10
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Original strand, 42186590 - 42187138
Alignment:
| Q |
8 |
ggtgccataacatgtgatgctcatcacatgactgatcctagatctgatggactaggagtatcatcttgcataaacaagggtttggaagatgctggggtat |
107 |
Q |
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| T |
42186590 |
ggtgccataacatgtgatgctcatcacatgactgatcctagatctgatggactaggagtatcatcttgcataaacaagggtttagaagatgctggggttt |
42186689 |
T |
|
| Q |
108 |
ctcctgaagaggtaagaaagatagcagtgacaagtaaccaataatatcaaaactggaaaaatttcatgttagtgcatgttcggattggtggtgagttcgg |
207 |
Q |
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| T |
42186690 |
ctcctgaagaggtaagaaagatagcagtgacaagtaaccaataatatcaaaactggaaaaatttcatgttagtgcatgttcggattggtggtgagttcgg |
42186789 |
T |
|
| Q |
208 |
cagaatcatgctgtgctgccataatttaaaaaatcacacagccaccgaaattttgccaaactcatggtgatatcaaacacgtttacacttaaacaagttc |
307 |
Q |
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| T |
42186790 |
cagaatcatggtgtgctgccacaatttaaaaaatcacacagccaccgaaattttgccaaactcatggtgatatcaaacacgtttacacttaaacaagttc |
42186889 |
T |
|
| Q |
308 |
aaattctcatatttatgtaagaatcctaattggttaatttctaaattgttaaggtgaactatgtgaatgctcatgccacatccacactagccggtgactt |
407 |
Q |
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| T |
42186890 |
aaattctcatatttatgtaagaatcctaattggttaatttctaaattgtaaaggtgaactatgtgaatgctcatgccacatccacactagccggtgactt |
42186989 |
T |
|
| Q |
408 |
agctgaggttaatgcaatcaaacaagtttttaaggacacatcggaattgaaaatgaacgggactaaggtaagaaatttatttacttcaaaatatttcaga |
507 |
Q |
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| T |
42186990 |
agctgaggttaatgcaatcaaacaagtttttaaggacacatcggaattgaaaatgaacgggactaaggtaagaaatttatttgcttcaaaatatttcaga |
42187089 |
T |
|
| Q |
508 |
atcccaacaacatcttattgatcttgaagcttatcattatagtttattc |
556 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42187090 |
atcccaacaacatcttattgatcttgaagcttatcattatagtttattc |
42187138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 328 - 556
Target Start/End: Original strand, 42203961 - 42204189
Alignment:
| Q |
328 |
gaatcctaattggttaatttctaaattgttaaggtgaactatgtgaatgctcatgccacatccacactagccggtgacttagctgaggttaatgcaatca |
427 |
Q |
| |
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|||||||||||| || ||| ||||||| |||||||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
42203961 |
gaatcctaattgtctacttttcaaattgtaaaggtgaactatgtaaatgctcacgccacatcatcactgatcggtgacttagctgaggttaatgcaatca |
42204060 |
T |
|
| Q |
428 |
aacaagtttttaaggacacatcggaattgaaaatgaacgggactaaggtaagaaatttatttacttcaaaatatttcagaatcccaacaacatcttattg |
527 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42204061 |
aacaagtttttaaggacacatcggaattgaaaatgaacgggactaaggtaagaaatttatttgcttcaaaatatttcagaatcccaacaacatcttattg |
42204160 |
T |
|
| Q |
528 |
atcttgaagcttatcattatagtttattc |
556 |
Q |
| |
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| T |
42204161 |
atcttgaagcttatcattatagtttattc |
42204189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 328 - 477
Target Start/End: Original strand, 42196704 - 42196853
Alignment:
| Q |
328 |
gaatcctaattggttaatttctaaattgttaaggtgaactatgtgaatgctcatgccacatccacactagccggtgacttagctgaggttaatgcaatca |
427 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||||| ||||||||| |
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| T |
42196704 |
gaatcctaattggttaatttctaaattgtaaaggtgaactatgtgaatgctcatgccacatccacggtagctggtgatttggctgaggtttatgcaatca |
42196803 |
T |
|
| Q |
428 |
aacaagtttttaaggacacatcggaattgaaaatgaacgggactaaggta |
477 |
Q |
| |
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|||| ||||| ||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
42196804 |
aacaggttttcaaggatacatcagaattgaaaatgaacggaactaaggta |
42196853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 42196367 - 42196470
Alignment:
| Q |
19 |
atgtgatgctcatcacatgactgatcctagatctgatggactaggagtatcatcttgcataaacaagggtttggaagatgctggggtatctcctgaagag |
118 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||||| || || |||||||||||||||||| |||| ||| |||| ||||| || ||||||||| |
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| T |
42196367 |
atgtgatgctcatcacatgactgatccaaggtctgatggacttggtgtttcatcttgcataaacaagagtttagaaaatgccggggtttcccctgaagag |
42196466 |
T |
|
| Q |
119 |
gtaa |
122 |
Q |
| |
|
|||| |
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|
| T |
42196467 |
gtaa |
42196470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 42203758 - 42203874
Alignment:
| Q |
8 |
ggtgccataacatgtgatgctcatcacatgactgatcctagatctgatggactaggagtatcatcttgcataaacaagggtttggaagatgctggggtat |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| | |||||||||| ||| || |||||||||| |||| |||| ||||||||||||| | |
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| T |
42203758 |
ggtgccataacatgtgatgctcatcatatgactaatccaatgcctgatggacttggacagtcctcttgcataagcaagagtttacaagatgctggggttt |
42203857 |
T |
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| Q |
108 |
ctcctgaagaggtaaga |
124 |
Q |
| |
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| ||| ||||||||||| |
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| T |
42203858 |
cccctcaagaggtaaga |
42203874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 46610613 - 46610573
Alignment:
| Q |
20 |
tgtgatgctcatcacatgactgatcctagatctgatggact |
60 |
Q |
| |
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||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
46610613 |
tgtgatgcttatcacatgactgatccaagatctgacggact |
46610573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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