View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-11 (Length: 537)
Name: NF4658-Insertion-11
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Complemental strand, 15626337 - 15625914
Alignment:
| Q |
8 |
caagtcgcaaccacatatttcacaaacaaataaactatatgtaactaataagtaatgactataacagaaagcaaatgataagaaaaacacaatagaggaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15626337 |
caagtcgcaaccacatatttcacaaacaaataaactatatgtaattaataagtaatgactataacagaaagcaaatgataagaaaaacacaatagaggaa |
15626238 |
T |
|
| Q |
108 |
aaacaaattatgtaaaacaattttgaatgagtttatgcttacaagtgaaggcttggaaaatatatgccttccacactattgcagagaacagtgaccttct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15626237 |
aaacaaattatgtaaaacaattttgaatgagtttatgcttacaagtgaaggcttggaaaatatatgccttccacactattgcagagaacagtgaccttct |
15626138 |
T |
|
| Q |
208 |
ttggaagtactaacttcccattgtttttgttccatctatgttnnnnnnnctccact---gtagtgagaactgagaagtataaactacaagaagcaaaaca |
304 |
Q |
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| T |
15626137 |
ttggaagtactaacttcccattgtttttgttccatctatgttaaaaaaactccactgtagtagtgagaactgagaagtataaactacaagaagcaaaaca |
15626038 |
T |
|
| Q |
305 |
aaatgatacttattcaaacgcctaaagaaataatgttaaaacagcatagctgactcttaaataatgggattagttcattaaaaagttacatgcatggaac |
404 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15626037 |
aaatgatacttattcaaacgcctcaagaaataatgttaaaacagcatagttgactcttaaataatgggattagttcattaaaaagtta----catggaac |
15625942 |
T |
|
| Q |
405 |
tcctgttaggctacaacatcaatcaagg |
432 |
Q |
| |
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| T |
15625941 |
tcctgttaggctacaacatcaatcaagg |
15625914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 431 - 537
Target Start/End: Complemental strand, 15625764 - 15625658
Alignment:
| Q |
431 |
ggctaggattctttggctctccnnnnnnncgctcaagcacatagtaccaactaagcgtctttggctctccattttcactcgagcacatagtgccgactat |
530 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15625764 |
ggctaggagtctttggctctcctttttttcgctcaagcacatagtaccaactaagagtctttggctctccattttcactcgagcacatagtgccaactat |
15625665 |
T |
|
| Q |
531 |
ataggag |
537 |
Q |
| |
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||||||| |
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| T |
15625664 |
ataggag |
15625658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 522
Target Start/End: Complemental strand, 15625658 - 15625623
Alignment:
| Q |
487 |
gtctttggctctccattttcactcgagcacatagtg |
522 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
15625658 |
gtctttggttctccattttcactcgagcacatagtg |
15625623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 816684 - 816545
Alignment:
| Q |
106 |
aaaaacaaattatgtaaaacaattttgaatgagtttatgcttacaagtgaaggcttggaaaatatatgccttccacactattgcagagaacagtgacctt |
205 |
Q |
| |
|
||||||||||| |||||| || || |||| |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
816684 |
aaaaacaaattgtgtaaa-cacttctgaaggagtttatgcttacaagtgaagacatggaaaatatatgccttccacaccattgcagagaacagtgacctt |
816586 |
T |
|
| Q |
206 |
ctttggaagtactaacttcccattgtttttgttccatctat |
246 |
Q |
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||||||||| |||| ||||||||||| |||| ||||||||| |
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|
| T |
816585 |
ctttggaagcactaccttcccattgtatttgctccatctat |
816545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 41531033 - 41531148
Alignment:
| Q |
107 |
aaaacaaattatgtaaaacaattttgaatgagtttatgcttacaagtgaaggcttggaaaatatatgccttccacactattgcagagaacagtgaccttc |
206 |
Q |
| |
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|||| ||||||||| || |||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
41531033 |
aaaaaaaattatgtccaagaattttgatggagtttgtgcttacaagtgtaggcttggaaaatatatgccttccacaccattgcagagaacattgacctta |
41531132 |
T |
|
| Q |
207 |
tttggaagtactaact |
222 |
Q |
| |
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|||| ||| ||||||| |
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| T |
41531133 |
tttgaaagcactaact |
41531148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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