View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-12 (Length: 524)
Name: NF4658-Insertion-12
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 161 - 517
Target Start/End: Complemental strand, 10458126 - 10457767
Alignment:
| Q |
161 |
tgttaaccaggcgtcatcctttcggtgttatagtcttcccatcagagtcttgcttgctaacttacagttagaccatggaatcgtcaacaaaatcagatct |
260 |
Q |
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| T |
10458126 |
tgttaaccaggcgtcattatttcggtgttttaggcttcccatcagaaccttgcctgctaacttacagttggaccatggaatcatcaacaaaatcagatct |
10458027 |
T |
|
| Q |
261 |
gcaaaaacagaaatatttgcagattttagagatttagatttggaaatgcttgctaaagttgtacccttattgatccattaa-aaaatgcaataaggatct |
359 |
Q |
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|||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
10458026 |
gcaacaacaaaaatatttgcagcttttagagatttagatttggaaatgcttgcttaagttgtacccttattgatccattaaaaaaatgcaattaggatct |
10457927 |
T |
|
| Q |
360 |
aaattaaatacttgctaagtatatatgca--acagacacttcagattgcaggcatgtccgatatgcaacatcgacacagcactgtcacatacgtttacgt |
457 |
Q |
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|||||||||||||||||| |||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
10457926 |
aaattaaatacttgctaactatatatgcatcatagacatttcagattgcaggcaagtccgatatgcaacatcgacatagcactgacacatacgtttacgt |
10457827 |
T |
|
| Q |
458 |
tcaaccacttccattttttaaaattattactagtatcagtatcttgtatagtgatcgtgt |
517 |
Q |
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| T |
10457826 |
tcaaccacttccattttttaaaattattacaagtatcagtatcttgtgtagtgattgtgt |
10457767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 10458294 - 10458168
Alignment:
| Q |
30 |
aatctacacctctattatttataggaaaaccaaattcaacctctaacatagtaaaaagtctgctataagtatcacatatttctattctaacgagaaagta |
129 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10458294 |
aatctacacctctattatttttaggaaaaccaaattcaacctctaacatagtaaaaagtctgctataagtatcacatatttctattctaacgagaaagta |
10458195 |
T |
|
| Q |
130 |
cgataaattttgacatatttcccattg |
156 |
Q |
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||||||| ||||||||||||||||||| |
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| T |
10458194 |
cgataaagtttgacatatttcccattg |
10458168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 493
Target Start/End: Original strand, 33198337 - 33198372
Alignment:
| Q |
458 |
tcaaccacttccattttttaaaattattactagtat |
493 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
33198337 |
tcaatcacttccattttttaaaattattactagtat |
33198372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 26454071 - 26454126
Alignment:
| Q |
30 |
aatctacacctctattatttataggaaaaccaaattcaacctctaacatagtaaaa |
85 |
Q |
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|||||||| |||||| |||||||| ||||| ||||||||||| ||||| ||||||| |
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| T |
26454071 |
aatctacaactctatcatttatagaaaaactaaattcaacctataacacagtaaaa |
26454126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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