View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-13 (Length: 500)
Name: NF4658-Insertion-13
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 5075583 - 5075971
Alignment:
| Q |
8 |
ccttcaactgtttatcattgacaaaaatattgagaaacatcaacgatgaacaactgaaggaagatgtaaagtttcatgaaacgatttatgaatgtaattc |
107 |
Q |
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| T |
5075583 |
ccttcaactgtttatcattgacaaaaacattaagaaacatcaacgatgaacaactgaaggaagatgtaaagtttcatgaaacgatttatggatgtaattc |
5075682 |
T |
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| Q |
108 |
acttatttctgcaaagaagaagatactgaacgccaagaaagatgttgcctgaagtaaattagttggttgaacaagtggtgtaattaacaaaaacc----g |
203 |
Q |
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| T |
5075683 |
acttatttctgcaaagaagaagataccgaacgccaagaaagatgttgcctgaagtaaattagttggttgaacaagtaatgtaattaacaaaaaccctaag |
5075782 |
T |
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| Q |
204 |
tattcattataatgggatgatnnnnnnnntttgttaacttggcaattgacaatgactaacatgactagaaattggctgagattgacgaaaggattaaatc |
303 |
Q |
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| T |
5075783 |
tattcattataatgggatgataaaaaaaaattgttaacttggcaattgacaatgactaacatgactagaaattggctgagattgacgaaaggattaaatc |
5075882 |
T |
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| Q |
304 |
atcaatgtcctaattgaaaggnnnnnnnnnnnggggccaccacccacgccatgatagttgtcaccacatatgttgctcagcaacttctcatc |
395 |
Q |
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| T |
5075883 |
atcaatgtcctaattgaaagg---aaaaaaaaggggccaccacccacgccatgatagttgtcaccacatatgttgctcagcaacttctcatc |
5075971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 500
Target Start/End: Original strand, 5076034 - 5076076
Alignment:
| Q |
459 |
gtgtctatcta-tgaaataaacattggtatgttactaagatta |
500 |
Q |
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| T |
5076034 |
gtgtctatctaatgaaataaacattggtatgttactaagatta |
5076076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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