View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-14 (Length: 498)
Name: NF4658-Insertion-14
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-14 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 4143875 - 4144107
Alignment:
| Q |
7 |
agagcatggcaccgtcaatgtagttcattacacactgtattgggcccgataataatgggcccatcttaatataagaggaaaagatgaggattgttatttg |
106 |
Q |
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| T |
4143875 |
agagcatggcaccgtcaacgtagttcattacacactgtattgggcccgataataatgggcccatcttaatataagaggaaaagatgaggattgttatttg |
4143974 |
T |
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| Q |
107 |
cacccctctaatttacttctaacgcacctgtataagaaggggaaaaaagctcatgggctttgagcccaagcccgcccgcaaaaaacatacctatttatag |
206 |
Q |
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| T |
4143975 |
cacccctctaatttacttctaacgcacctgtataagaaggggaaaaaagctcatgggctttgagcccaagcccacccgcaaaaaacatacctatttatag |
4144074 |
T |
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| Q |
207 |
gtatgttaagctttcctttcctttaactctcga |
239 |
Q |
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| T |
4144075 |
gtatgttaagttttcctttcctttaactctcga |
4144107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 280 - 409
Target Start/End: Original strand, 4144151 - 4144281
Alignment:
| Q |
280 |
cttcttcttctagttgttgtatgcgaattgcaaatttatactctgttaaataacaagtttcaatttaaattttgaaatattttaggggttaagtaagtgt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4144151 |
cttcttcttctagttgttgtatgcgaattgcaaatttatactctgttaaataacaagtttcaatttaaattttgaaatattttaggggttaagtaagtgt |
4144250 |
T |
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| Q |
380 |
ta-tttcttttttgaaggagggttaaataag |
409 |
Q |
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| T |
4144251 |
tattttcttttttgaaggagggttaaataag |
4144281 |
T |
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