View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-15 (Length: 437)
Name: NF4658-Insertion-15
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-15 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 20755877 - 20755634
Alignment:
| Q |
7 |
aagatgcttgttgtggacttggtgaattgaattctcaatttctgtgtacaccaatttcaatcatttgtactaatagacaagaccatatcttttgggatca |
106 |
Q |
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| T |
20755877 |
aagatgcttgttgtggacttggtgaattgaattctcaatttctgtgtacaccaatttcaatcatttgttctaatagacaagaccatatattttgggatca |
20755778 |
T |
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| Q |
107 |
atttcatcctactgaggcagccactcgcacttttgtggatagactttataatggaccttcaaaatacacatctcctattaatatggaacaactactagct |
206 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20755777 |
atttcatcctactgaggcagccacacgcacttttgtggataaactttataatggaccttcaaaatacacatctcctattaatatggaacaactactagct |
20755678 |
T |
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| Q |
207 |
ctttgaattgttaaatagtattaaactagtcccttcaattcctt |
250 |
Q |
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| T |
20755677 |
ctttgaattgttaaatagtattaaactagtcccttcaattcctt |
20755634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 286 - 436
Target Start/End: Complemental strand, 20755633 - 20755483
Alignment:
| Q |
286 |
caattaagaaatattcttgaagaaattagtctatgtagttgtttgaggatactctaaaaaatattgctagaaggagaaatatgcaatggtattatgtcaa |
385 |
Q |
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| T |
20755633 |
caattaagaaatattcttgaagaaattagtctatgtagttgtttgaggatactctaaaaaatattgctagaaggagaaatgtgcaatggtattatgtcaa |
20755534 |
T |
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| Q |
386 |
ttaatttattagcaattttattcttctcttagtatatcttttttgttggtg |
436 |
Q |
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| T |
20755533 |
ttaatttattagcaattttattcttctcttagtatattttttttgttggtg |
20755483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 20751372 - 20751136
Alignment:
| Q |
7 |
aagatgcttgttgtggacttggtgaattgaattctcaatttctgtgtacaccaatttcaatcatttgtactaatagacaagaccatatcttttgggatca |
106 |
Q |
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||||||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||| | ||||| | ||||||||||||||||| |||||||||| |
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| T |
20751372 |
aagatgcttgttgtggacttggtgagctgaatgctcaatttttttgtacaccagtttcaagcctttgtgccaatagacaagaccatattttttgggatcc |
20751273 |
T |
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| Q |
107 |
atttcatcctactgaggcagccactcgcacttttgtggatagactttataatggaccttcaaaatacacatctcctattaatatggaacaactactagct |
206 |
Q |
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| T |
20751272 |
agtccatcctactgaggcagccatgcgtatctttgttgatagactttacaatggaccttcaaaatacacatttcctattaatatggaacaactagtagct |
20751173 |
T |
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| Q |
207 |
ctttgaattgttaaatagtattaaactagtcccttcaatt |
246 |
Q |
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| T |
20751172 |
atttgaatggtcaaa---tattaaactagtctcttcaatt |
20751136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 20799687 - 20799511
Alignment:
| Q |
15 |
tgttgtggacttggtgaattgaattctcaatttctgtgtacaccaatttcaatcatttgtactaatagacaagaccatatcttttgggatcaatttcatc |
114 |
Q |
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||||||||| |||||||| ||||| || || ||| ||| ||||| | ||| ||||||||| ||||||||||||||||||||||||||| | | |||| |
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| T |
20799687 |
tgttgtggaattggtgaactgaatgctgaagttccatgtctaccaagtgcaaacatttgtaccaatagacaagaccatatcttttgggattcagtccatc |
20799588 |
T |
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| Q |
115 |
ctactgaggcagccactcgcacttttgtggatagactttataatggaccttcaaaatacacatctcctattaatatg |
191 |
Q |
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|||||||||||| ||||||| |||| |||||||||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
20799587 |
ctactgaggcagtaactcgcataattgtcgatagactttataatggaccgtcacaatacacatctcctgttaatatg |
20799511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 40641845 - 40641891
Alignment:
| Q |
81 |
agacaagaccatatcttttgggatcaatttcatcctactgaggcagc |
127 |
Q |
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| T |
40641845 |
agacaagaccacattttctgggatcaatttcatcctacagaggcagc |
40641891 |
T |
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