View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-19 (Length: 424)
Name: NF4658-Insertion-19
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-19 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 238 - 424
Target Start/End: Complemental strand, 26597357 - 26597171
Alignment:
| Q |
238 |
atagatatcatcatattcttgttcatttggaatgtttcttccagaaccttgagcgaacaacgtgatgattataatgttaccgataaggaaaacaaaataa |
337 |
Q |
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| T |
26597357 |
atagacatcatcatattcttgttcatttggaacgtttcttccagaaccttgagcgaagaacgtgatgattataatgttaccgataaggaaaacaaaataa |
26597258 |
T |
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| Q |
338 |
tgactatttatagagactgaaaagtcctttaaatactcgcttgagtttcttattgcaactagtaacttcatagaaagccttgaaatc |
424 |
Q |
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| T |
26597257 |
tgactatttatagagactaaaaagtcctttaaatactcgcttgagtttcttactacaactggtagcttcatagaaagccttgaaatc |
26597171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 26597585 - 26597464
Alignment:
| Q |
10 |
aacaacatgagcaggttcaatgtttttccttccattgttctcactctcacacctttgcaacacacgatgttgnnnnnnnaaattttcactctcacacctt |
109 |
Q |
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| T |
26597585 |
aacaacatgagcaggttcaatgtttttccttccattgttctcactctcacacctttgcaacacacgatgttgtttttttaaattttcactctcacacctt |
26597486 |
T |
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| Q |
110 |
ctataactcttcttcacccctc |
131 |
Q |
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| T |
26597485 |
ctataactcttcttcacccctc |
26597464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 242 - 424
Target Start/End: Complemental strand, 26612673 - 26612491
Alignment:
| Q |
242 |
atatcatcatattcttgttcatttggaatgtttcttccagaaccttgagcgaacaacgtgatgattataatgttaccgataaggaaaacaaaataatgac |
341 |
Q |
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| T |
26612673 |
atatcatcatgttcctgttcttttggaatgttttttccattaccttgagcgaacagcgtgatgattataatgtttccgataacaaagacaaaatagtggc |
26612574 |
T |
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| Q |
342 |
tatttatagagactgaaaagtcctttaaatactcgcttgagtttcttattgcaactagtaacttcatagaaagccttgaaatc |
424 |
Q |
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| T |
26612573 |
tattgataaagactgaaatatcctttaaatactcgctcgagtttcttaccacaattggtaacttcatagaaagtcttgaaatc |
26612491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 242 - 424
Target Start/End: Complemental strand, 26605156 - 26604974
Alignment:
| Q |
242 |
atatcatcatattcttgttcatttggaatgtttcttccagaaccttgagcgaacaacgtgatgattataatgttaccgataaggaaaacaaaataatgac |
341 |
Q |
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|||||||||| ||| ||||| ||||||| ||| |||||||||| ||||| ||||||||||||||||||| ||||||||| | |||||||||||||| | |
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| T |
26605156 |
atatcatcatgttcatgttcttttggaacattttttccagaaccctgagcaaacaacgtgatgattataacgttaccgattacaaaaacaaaataatggc |
26605057 |
T |
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| Q |
342 |
tatttatagagactgaaaagtcctttaaatactcgcttgagtttcttattgcaactagtaacttcatagaaagccttgaaatc |
424 |
Q |
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| T |
26605056 |
tattgacaatgaccgaaacgtcccttaaatactcacttgagtttcttactacaactagtagcttcaaagaaagccttgaaatc |
26604974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 26612927 - 26612877
Alignment:
| Q |
18 |
gagcaggttcaatgtttttccttccattgttctcactctcacacctttgca |
68 |
Q |
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| T |
26612927 |
gagcagcttcaatctttttccttccgctgttctcactctcacatctttgca |
26612877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 26605376 - 26605271
Alignment:
| Q |
19 |
agcaggttcaatgtttttccttccattgttctcactctcacacctttgcaacacacgatgttgnnnnnnnaaattttcactctcacaccttctataactc |
118 |
Q |
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||||| ||||||| |||||||| |||| ||||||||||||||||| ||| |||||| || | ||| | | | |||||||||||||||||||| |
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| T |
26605376 |
agcagcttcaatgattttcctttcatt---ctcactctcacacctttccaatacacgacgtcgtttcttcaaaatattagtctcacaccttctataactc |
26605280 |
T |
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| Q |
119 |
ttcttcacc |
127 |
Q |
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||||||||| |
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| T |
26605279 |
ttcttcacc |
26605271 |
T |
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