View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4658-Insertion-20 (Length: 413)

Name: NF4658-Insertion-20
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4658-Insertion-20
NF4658-Insertion-20
[»] chr4 (11 HSPs)
chr4 (6-413)||(47281918-47282329)
chr4 (73-109)||(52726037-52726073)
chr4 (74-109)||(41633381-41633416)
chr4 (71-109)||(18375387-18375425)
chr4 (74-107)||(23348112-23348145)
chr4 (74-109)||(54021241-54021276)
chr4 (74-109)||(54358277-54358312)
chr4 (71-109)||(17847538-17847576)
chr4 (75-109)||(37674000-37674034)
chr4 (74-107)||(41497890-41497923)
chr4 (213-261)||(41074751-41074799)
[»] chr2 (8 HSPs)
chr2 (72-117)||(35676268-35676313)
chr2 (71-109)||(13686158-13686196)
chr2 (73-109)||(14940985-14941021)
chr2 (74-107)||(24413870-24413903)
chr2 (72-109)||(28429443-28429480)
chr2 (73-109)||(45093147-45093183)
chr2 (74-109)||(2752614-2752649)
chr2 (75-106)||(19899087-19899118)
[»] chr3 (5 HSPs)
chr3 (72-109)||(23642976-23643013)
chr3 (72-109)||(39145416-39145453)
chr3 (74-109)||(34624486-34624521)
chr3 (74-109)||(52546907-52546942)
chr3 (76-109)||(45166391-45166424)
[»] chr1 (12 HSPs)
chr1 (72-109)||(4624503-4624540)
chr1 (72-109)||(16255019-16255056)
chr1 (71-109)||(42480288-42480326)
chr1 (207-261)||(50668321-50668375)
chr1 (77-109)||(41647392-41647424)
chr1 (75-109)||(47550956-47550990)
chr1 (72-109)||(20809112-20809149)
chr1 (207-252)||(50669606-50669651)
chr1 (71-107)||(1270338-1270374)
chr1 (77-109)||(9098571-9098603)
chr1 (73-109)||(31032695-31032731)
chr1 (73-109)||(34476064-34476100)
[»] chr8 (10 HSPs)
chr8 (73-109)||(33889013-33889049)
chr8 (74-109)||(41322694-41322729)
chr8 (72-109)||(4824307-4824344)
chr8 (73-109)||(13357628-13357664)
chr8 (72-107)||(2001814-2001849)
chr8 (74-109)||(15561913-15561948)
chr8 (74-109)||(36473048-36473083)
chr8 (74-109)||(37919508-37919543)
chr8 (74-107)||(1416048-1416081)
chr8 (72-109)||(29314164-29314201)
[»] scaffold0339 (1 HSPs)
scaffold0339 (70-109)||(13407-13446)
[»] chr6 (3 HSPs)
chr6 (74-112)||(17366978-17367016)
chr6 (72-104)||(3835318-3835350)
chr6 (74-106)||(7646773-7646805)
[»] chr5 (6 HSPs)
chr5 (71-109)||(4391841-4391879)
chr5 (72-109)||(3456914-3456951)
chr5 (72-109)||(43141517-43141554)
chr5 (72-107)||(32891341-32891376)
chr5 (74-112)||(34286755-34286793)
chr5 (72-109)||(8692673-8692710)
[»] chr7 (2 HSPs)
chr7 (72-109)||(42195542-42195579)
chr7 (73-109)||(23991948-23991984)


Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 413
Target Start/End: Complemental strand, 47282329 - 47281918
Alignment:
Q  6 caaagaataccatgcaacatattgtatgtgatatcataacatacttcaacaagatatgtttttcataaggaaaatgctatttctctagaaaaatagcatc 105  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  47282329 caaagaataccatgcaacatattgcatgtgatatcataacatacttcaacaagatatgttttccataagaaaaatgctatttctctagaaaaatagcatc 47282230  T
Q  106 aagatttgttttcaattggtgtattctagggccatttgcaaccgagaacctttccttaatgtctttccacaaacctcctcagttggttaaaatgtcctcg 205  Q
    |||||||||||||| |||||||||||||||  |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47282229 aagatttgttttcagttggtgtattctaggatcattcgcaaccgagaacctttccttaatgtcttcccacaaacctcctcagttggttaaaatgtcctcg 47282130  T
Q  206 cccctttggtttcctatttgataaaaacaataaacaaaacttgctaagaagcaaaatatgttttttagttttcttgccctttattcatgcaatttgttca 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||      
T  47282129 cccctttggtttcctatttgatcaaaacaataaacaaaacttgctaagaagcataatccgttttttagttttcttgccctttattcatgcaatttgttat 47282030  T
Q  306 gattcagatggactttacgcaggccctttta----aatacctcatcagatgatgcttttgtagcaggagatgctcgaaagttcttggcagacagctataa 401  Q
    ||||||||||||||||||||| |||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  47282029 gattcagatggactttacgcatgcccttttaaattaatacctcatcagatgatgcttttgtagcaggagatactcgaaagttcttggcagacaactataa 47281930  T
Q  402 caatgatcttgc 413  Q
    ||||||||||||    
T  47281929 caatgatcttgc 47281918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 52726073 - 52726037
Alignment:
Q  73 aggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||||||||||||||||||||||||||    
T  52726073 aggaaaatgctatttctctagaaaaatagcatcaaga 52726037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 41633416 - 41633381
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||||||||||||||||||||||||||||    
T  41633416 ggaaaatgctatttctctagaaaaatagcatcaaga 41633381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 18375387 - 18375425
Alignment:
Q  71 taaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  18375387 taaggaaaatgttatttctctagaaaaatagcatcaaga 18375425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 23348112 - 23348145
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaa 107  Q
    ||||||||||||||||||||||||||||||||||    
T  23348112 ggaaaatgctatttctctagaaaaatagcatcaa 23348145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 54021241 - 54021276
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||| |||||||||||||||||||||||||||    
T  54021241 ggaaaatgttatttctctagaaaaatagcatcaaga 54021276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 54358312 - 54358277
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||| |||||||||||||||||||||||||||    
T  54358312 ggaaaatgttatttctctagaaaaatagcatcaaga 54358277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 17847538 - 17847576
Alignment:
Q  71 taaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  17847538 taaggaaaatgttatttctctcgaaaaatagcatcaaga 17847576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 37674000 - 37674034
Alignment:
Q  75 gaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||| |||||||||||||||||||||||||||    
T  37674000 gaaaatgatatttctctagaaaaatagcatcaaga 37674034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 41497890 - 41497923
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaa 107  Q
    ||||||||||||||||||| ||||||||||||||    
T  41497890 ggaaaatgctatttctctaaaaaaatagcatcaa 41497923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 41074751 - 41074799
Alignment:
Q  213 ggtttcctatttgataaaaacaataaacaaaacttgctaagaagcaaaa 261  Q
    |||||| |||||||| ||||||| ||||| || ||||||||||||||||    
T  41074751 ggtttcttatttgatcaaaacaacaaacagaagttgctaagaagcaaaa 41074799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 35676268 - 35676313
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaagatttgtttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  35676268 aaggaaaatgctatttctctagaaaaatagcatcaagatttttttt 35676313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 13686196 - 13686158
Alignment:
Q  71 taaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13686196 taaggaaaatgctatttctctagaaaaatagcatcaaga 13686158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 14940985 - 14941021
Alignment:
Q  73 aggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||||||||||||||||||||||||||    
T  14940985 aggaaaatgctatttctctagaaaaatagcatcaaga 14941021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 24413903 - 24413870
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaa 107  Q
    ||||||||||||||||||||||||||||||||||    
T  24413903 ggaaaatgctatttctctagaaaaatagcatcaa 24413870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 28429480 - 28429443
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||||||| |||||||||||||||||||    
T  28429480 aaggaaaatgctatttctttagaaaaatagcatcaaga 28429443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 45093147 - 45093183
Alignment:
Q  73 aggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||| |||||||||||||||||||||||||||    
T  45093147 aggaaaatgttatttctctagaaaaatagcatcaaga 45093183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 2752614 - 2752649
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||| ||||||||||||||||||||||||||||||    
T  2752614 ggaaattgctatttctctagaaaaatagcatcaaga 2752649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 106
Target Start/End: Complemental strand, 19899118 - 19899087
Alignment:
Q  75 gaaaatgctatttctctagaaaaatagcatca 106  Q
    ||||||||||||||||||||||||||||||||    
T  19899118 gaaaatgctatttctctagaaaaatagcatca 19899087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 23642976 - 23643013
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23642976 aaggaaaatgctatttctctagaaaaatagcatcaaga 23643013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 39145453 - 39145416
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39145453 aaggaaaatgctatttctctagaaaaatagcatcaaga 39145416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 34624486 - 34624521
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||| |||||||||||||||||||||||||||    
T  34624486 ggaaaatgttatttctctagaaaaatagcatcaaga 34624521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 52546942 - 52546907
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||||||||||||||| |||||||||    
T  52546942 ggaaaatgctatttctctagaaaaattgcatcaaga 52546907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 45166424 - 45166391
Alignment:
Q  76 aaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||| |||||||||||||||||||||||||||    
T  45166424 aaaatgttatttctctagaaaaatagcatcaaga 45166391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 4624540 - 4624503
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4624540 aaggaaaatgctatttctctagaaaaatagcatcaaga 4624503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 16255056 - 16255019
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16255056 aaggaaaatgctatttctctagaaaaatagcatcaaga 16255019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 42480326 - 42480288
Alignment:
Q  71 taaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  42480326 taaggaaaatgttatttctctagaaaaatagcatcaaga 42480288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 50668321 - 50668375
Alignment:
Q  207 ccctttggtttcctatttgataaaaacaataaacaaaacttgctaagaagcaaaa 261  Q
    |||||||||||| |||||||| |||||||| ||||||| |||||||| |||||||    
T  50668321 ccctttggtttcttatttgatcaaaacaatgaacaaaagttgctaagcagcaaaa 50668375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 41647424 - 41647392
Alignment:
Q  77 aaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||||||||||||||||||||||    
T  41647424 aaatgctatttctctagaaaaatagcatcaaga 41647392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 47550990 - 47550956
Alignment:
Q  75 gaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||| |||||||||||||||||||||||||||    
T  47550990 gaaaatgttatttctctagaaaaatagcatcaaga 47550956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 20809149 - 20809112
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||  |||||||||||||||||||||||||||    
T  20809149 aaggaaaattttatttctctagaaaaatagcatcaaga 20809112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 50669606 - 50669651
Alignment:
Q  207 ccctttggtttcctatttgataaaaacaataaacaaaacttgctaa 252  Q
    |||||||||||| |||||||| ||||||||||||| || |||||||    
T  50669606 ccctttggtttcttatttgatcaaaacaataaacagaagttgctaa 50669651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 1270374 - 1270338
Alignment:
Q  71 taaggaaaatgctatttctctagaaaaatagcatcaa 107  Q
    |||||||| | ||||||||||||||||||||||||||    
T  1270374 taaggaaactactatttctctagaaaaatagcatcaa 1270338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 9098571 - 9098603
Alignment:
Q  77 aaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||| |||||||||||||||||||||||||    
T  9098571 aaatgctttttctctagaaaaatagcatcaaga 9098603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 31032695 - 31032731
Alignment:
Q  73 aggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  31032695 aggaaaatgttatttttctagaaaaatagcatcaaga 31032731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 34476100 - 34476064
Alignment:
Q  73 aggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  34476100 aggaaaaggctatttctctagaaaaatagtatcaaga 34476064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 33889049 - 33889013
Alignment:
Q  73 aggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||||||||||||||||||||||||||    
T  33889049 aggaaaatgctatttctctagaaaaatagcatcaaga 33889013  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 41322729 - 41322694
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||||||||||||||||||||||||||||    
T  41322729 ggaaaatgctatttctctagaaaaatagcatcaaga 41322694  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 4824344 - 4824307
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  4824344 aaggaaaatgctatttctctagaaaaatagcattaaga 4824307  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 13357628 - 13357664
Alignment:
Q  73 aggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||||||| |||||||||||||||||||||    
T  13357628 aggaaaatgctatttatctagaaaaatagcatcaaga 13357664  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 2001849 - 2001814
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaa 107  Q
    |||||||||| |||||||||||||||||||||||||    
T  2001849 aaggaaaatgttatttctctagaaaaatagcatcaa 2001814  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 15561913 - 15561948
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||| |||||||||||||||||||||    
T  15561913 ggaaaatgctatttatctagaaaaatagcatcaaga 15561948  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 36473048 - 36473083
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||||||||||||||||||| ||||||||    
T  36473048 ggaaaatgctatttctctagaaaaataacatcaaga 36473083  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 37919508 - 37919543
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||||||||||||||||| |||||||    
T  37919508 ggaaaatgctatttctctagaaaaatagtatcaaga 37919543  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 1416048 - 1416081
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaa 107  Q
    |||||||| |||||||||||||||||||||||||    
T  1416048 ggaaaatgttatttctctagaaaaatagcatcaa 1416081  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 29314201 - 29314164
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  29314201 aaggaaaatgctatttctctaaaaaaatagtatcaaga 29314164  T

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Target: scaffold0339 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 13446 - 13407
Alignment:
Q  70 ataaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  13446 ataaggaaaatgatatttctctagaaaaatagcatcaaga 13407  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 17367016 - 17366978
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaagattt 112  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  17367016 ggaaaatgctatttctctagaaaaatagcatcaaaattt 17366978  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 3835350 - 3835318
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcat 104  Q
    |||||||||| ||||||||||||||||||||||    
T  3835350 aaggaaaatgttatttctctagaaaaatagcat 3835318  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 7646773 - 7646805
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatca 106  Q
    |||||||||||||||||||||||||||| ||||    
T  7646773 ggaaaatgctatttctctagaaaaatagtatca 7646805  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 4391841 - 4391879
Alignment:
Q  71 taaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  4391841 taaggaaaatgcaatttctctagaaaaatagcatcaaga 4391879  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 3456951 - 3456914
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||||| |||||||||||||||||||||    
T  3456951 aaggaaaatgctatttttctagaaaaatagcatcaaga 3456914  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 43141517 - 43141554
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||| |||||||||||||||||||||||||||    
T  43141517 aaggaaaatgttatttctctagaaaaatagcatcaaga 43141554  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 32891376 - 32891341
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaa 107  Q
    |||||||||||||||| |||||||||||||||||||    
T  32891376 aaggaaaatgctatttatctagaaaaatagcatcaa 32891341  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 34286793 - 34286755
Alignment:
Q  74 ggaaaatgctatttctctagaaaaatagcatcaagattt 112  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  34286793 ggaaaatgttatttctctagaaaaatagcatcaaaattt 34286755  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 8692710 - 8692673
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  8692710 aaggaaaatgttatttctctaaaaaaatagcatcaaga 8692673  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 42195579 - 42195542
Alignment:
Q  72 aaggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  42195579 aaggaaaatgttatttctctagaaaaataacatcaaga 42195542  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 23991948 - 23991984
Alignment:
Q  73 aggaaaatgctatttctctagaaaaatagcatcaaga 109  Q
    |||||||||||||||||||||||| |||| |||||||    
T  23991948 aggaaaatgctatttctctagaaacatagtatcaaga 23991984  T

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