View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4658-Insertion-21 (Length: 359)

Name: NF4658-Insertion-21
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4658-Insertion-21
NF4658-Insertion-21
[»] chr4 (1 HSPs)
chr4 (5-359)||(47895740-47896078)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 5 - 359
Target Start/End: Original strand, 47895740 - 47896078
Alignment:
Q  5 acaaaattcacattggatatattatctttttaacggttgccctcacgcaacatactaccaagaaaggggaacatcaagagaattattcatttttgtctat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||    
T  47895740 acaaaattcacattggatatattatctttttaacggttgccctcacgcaacatacta---agaaaggggaacatcaagagaattattaatttttgtctat 47895836  T
Q  105 gtttatgagtgatgatgacgaatagctaatcagcctaaatgccaagattgctgacttcacatgcttcttttataaacaatacaaattattttcttaataa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47895837 gtttatgagtgatgatgacgaatagctaatcagcctaaatgccaagattgctgacttcacatgcttcttttataaacaatacaaattattttcttaataa 47895936  T
Q  205 taaaaatatctgtcaaacttttcttttgatggttttggccatctggttttgaccatcaacttatcttgaactcccttgtattatttcacttataaggcat 304  Q
    |||||||||||||||||||||||||||||              ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  47895937 taaaaatatctgtcaaacttttcttttga--------------tggttttgaccatcaacttgttttgaactcccttgtattatttcacttataaggcat 47896022  T
Q  305 ggttagtgtttattgtttcatccaaggtaccaaa-ttttttaggaccaaccctgta 359  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47896023 ggttagtgtttattgtttcatccaaggtaccaaatttttttaggaccaaccctgta 47896078  T

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