View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4658-Insertion-22 (Length: 349)

Name: NF4658-Insertion-22
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4658-Insertion-22
NF4658-Insertion-22
[»] chr4 (12 HSPs)
chr4 (21-286)||(3172303-3172568)
chr4 (288-349)||(3172211-3172273)
chr4 (295-348)||(10441197-10441251)
chr4 (288-349)||(51744676-51744738)
chr4 (288-349)||(37064945-37065007)
chr4 (288-349)||(40071641-40071703)
chr4 (294-349)||(925328-925384)
chr4 (314-349)||(28910348-28910383)
chr4 (295-349)||(33800974-33801029)
chr4 (278-306)||(21240326-21240354)
chr4 (278-306)||(35644013-35644041)
chr4 (288-347)||(41555508-41555568)
[»] chr6 (9 HSPs)
chr6 (283-349)||(13210385-13210452)
chr6 (294-349)||(1870586-1870642)
chr6 (288-349)||(1241155-1241217)
chr6 (288-349)||(13042018-13042080)
chr6 (288-347)||(12350318-12350378)
chr6 (294-349)||(29182643-29182699)
chr6 (295-349)||(7271270-7271325)
chr6 (288-349)||(16435825-16435887)
chr6 (289-349)||(28541779-28541840)
[»] chr8 (9 HSPs)
chr8 (295-349)||(9753823-9753878)
chr8 (294-349)||(13243738-13243794)
chr8 (295-349)||(12738558-12738613)
chr8 (288-349)||(18575074-18575136)
chr8 (288-349)||(27820819-27820881)
chr8 (288-349)||(39906956-39907018)
chr8 (295-349)||(17336162-17336217)
chr8 (278-306)||(9753770-9753798)
chr8 (278-306)||(9754041-9754069)
[»] scaffold0047 (1 HSPs)
scaffold0047 (288-349)||(69799-69861)
[»] chr7 (12 HSPs)
chr7 (288-349)||(40232307-40232369)
chr7 (288-349)||(48838106-48838168)
chr7 (288-349)||(21442990-21443052)
chr7 (288-349)||(24300336-24300398)
chr7 (288-349)||(25943837-25943899)
chr7 (288-349)||(38276737-38276799)
chr7 (288-347)||(31689547-31689607)
chr7 (288-349)||(4040993-4041055)
chr7 (295-348)||(22337764-22337818)
chr7 (288-349)||(29737451-29737513)
chr7 (278-306)||(21443070-21443098)
chr7 (278-306)||(38276817-38276845)
[»] chr5 (6 HSPs)
chr5 (288-349)||(2970856-2970918)
chr5 (295-348)||(33403247-33403301)
chr5 (288-349)||(42897566-42897628)
chr5 (275-306)||(2970936-2970967)
chr5 (295-349)||(14044109-14044164)
chr5 (288-349)||(36982232-36982294)
[»] chr2 (10 HSPs)
chr2 (288-349)||(4828281-4828343)
chr2 (287-349)||(16964861-16964924)
chr2 (295-349)||(42847099-42847154)
chr2 (288-349)||(29194034-29194096)
chr2 (295-348)||(31922032-31922086)
chr2 (288-349)||(45080610-45080672)
chr2 (288-349)||(2110266-2110328)
chr2 (288-349)||(43370720-43370782)
chr2 (278-306)||(1779344-1779372)
chr2 (276-304)||(16964811-16964839)
[»] chr1 (12 HSPs)
chr1 (288-349)||(46370973-46371035)
chr1 (288-349)||(1929408-1929470)
chr1 (288-349)||(40562626-40562688)
chr1 (295-349)||(1207643-1207697)
chr1 (291-349)||(8229112-8229171)
chr1 (295-349)||(50777050-50777105)
chr1 (288-349)||(28036893-28036955)
chr1 (288-349)||(39151089-39151151)
chr1 (288-349)||(46862602-46862664)
chr1 (294-349)||(32045885-32045941)
chr1 (278-306)||(40562436-40562464)
chr1 (306-349)||(47603765-47603809)
[»] chr3 (8 HSPs)
chr3 (288-348)||(30459852-30459913)
chr3 (288-349)||(41346093-41346155)
chr3 (288-349)||(50676521-50676583)
chr3 (288-349)||(51545708-51545770)
chr3 (288-349)||(54014283-54014345)
chr3 (288-349)||(12568200-12568262)
chr3 (288-349)||(13544664-13544726)
chr3 (288-349)||(40496819-40496881)
[»] scaffold0532 (1 HSPs)
scaffold0532 (295-349)||(3867-3922)
[»] scaffold1194 (1 HSPs)
scaffold1194 (288-349)||(1025-1087)
[»] scaffold0318 (1 HSPs)
scaffold0318 (288-349)||(16403-16465)
[»] scaffold0061 (1 HSPs)
scaffold0061 (288-349)||(10209-10271)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 286
Target Start/End: Complemental strand, 3172568 - 3172303
Alignment:
Q  21 tatgctatgttgtgtgcacagcacaagccactaagttggtattaattttgtgtctgannnnnnnnnnnnnnntgtggctatgaatttatagagagagtaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||    
T  3172568 tatgctatgttgtgtgcacagcacaagccactaagttggtattaattttgtgtctgaagagagaagagagagtgtggctatgaatttatagagagagtaa 3172469  T
Q  121 tgaattgagccattgaaatggaatcaaaccatgaaaaaggtggcaagtgtttgtcattgtcgcgtggaggtttattgttctaaagtcgtagttattggaa 220  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3172468 tgaattgagccattgaaatggaatcaaaccttgaaaaaggtggcaagtgtttgtcattgtcgcgtggaggtttattgttctaaagtcgtagttattggaa 3172369  T
Q  221 tcttcaaggggctgttcagtcatatcatatcccttctttccatgaaaaatcgtatactactccctc 286  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3172368 tcttcaaggggctgttcagtcatatcatatcccttcttcccatgaaaaatcgtatactactccctc 3172303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 3172273 - 3172211
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  3172273 gtcccacaatacttgactttctcaaatttctaagcagaatttgacaaatttaccttttataaa 3172211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 10441197 - 10441251
Alignment:
Q  295 aatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataa 348  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  10441197 aatacttgaccttctcaaattttaaagcaaaatttgacaattttacctcttataa 10441251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 51744738 - 51744676
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||    
T  51744738 gtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccccttataaa 51744676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 37065007 - 37064945
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  37065007 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacatatttaccccttataaa 37064945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 40071703 - 40071641
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  40071703 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 40071641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 925384 - 925328
Alignment:
Q  294 caatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  925384 caatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 925328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 28910383 - 28910348
Alignment:
Q  314 ttttaagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||||||||||||||||||| ||||||||    
T  28910383 ttttaagcagaatttgacaaatttaccccttataaa 28910348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 33801029 - 33800974
Alignment:
Q  295 aatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||||||||| |||| |||| | ||||||||| ||||||||||||||||    
T  33801029 aatacttgaccttctcagatttctaagtaaaatttgacagatttacctcttataaa 33800974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 21240326 - 21240354
Alignment:
Q  278 tactccctccgtccctcaatacttgacct 306  Q
    |||||||||||||||||||||||||||||    
T  21240326 tactccctccgtccctcaatacttgacct 21240354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 35644013 - 35644041
Alignment:
Q  278 tactccctccgtccctcaatacttgacct 306  Q
    |||||||||||||||||||||||||||||    
T  35644013 tactccctccgtccctcaatacttgacct 35644041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 41555508 - 41555568
Alignment:
Q  288 gtccctcaatacttgaccttctcaaa-ttttaagcagaatttgacaaatttacctcttata 347  Q
    ||||| ||||| |||||||||||||| ||||||||  |||||||||| |||||| ||||||    
T  41555508 gtcccgcaataattgaccttctcaaatttttaagcttaatttgacaagtttaccccttata 41555568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 13210385 - 13210452
Alignment:
Q  283 cctccgtccctcaatacttgaccttctcaaa-ttttaagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  13210385 cctccgtccctcaatacttgaccttctcaaatttttaagcagaatttgacaaatttacccattataaa 13210452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 1870586 - 1870642
Alignment:
Q  294 caatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataaa 349  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  1870586 caatacttgaccttctcagatttttaagcagaatttgacaaatttaccccttataaa 1870642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 1241155 - 1241217
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||| ||||||| |||| |||||| ||||||||| ||||||||||||||||    
T  1241155 gtcccacaatacttgaacttctcagatttctaagcaaaatttgacagatttacctcttataaa 1241217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 13042018 - 13042080
Alignment:
Q  288 gtccctcaatacttgaccttctca-aattttaagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| | ||||||||| ||||||||| ||||||| ||||||||    
T  13042018 gtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttaccccttataaa 13042080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 12350318 - 12350378
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttata 347  Q
    ||||| ||||| ||||||||||||||||| |||||| ||||||||| ||||||| ||||||    
T  12350318 gtcccacaatatttgaccttctcaaatttctaagcaaaatttgacagatttaccccttata 12350378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 29182643 - 29182699
Alignment:
Q  294 caatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    |||||||||||||||||| |||| || ||| ||||||||| ||||||||||||||||    
T  29182643 caatacttgaccttctcagatttctaggcaaaatttgacagatttacctcttataaa 29182699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 7271325 - 7271270
Alignment:
Q  295 aatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||||||| | |||| |||||||||||||||| ||||||| ||||||||    
T  7271325 aatacttgaccttcttagatttctaagcagaatttgacagatttaccccttataaa 7271270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 16435825 - 16435887
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||||||||||||||| |||| | ||||||||| ||||||| | ||||||    
T  16435825 gtcccacaatacttgaccttctcaaatttctaaggaaaatttgacagatttaccccatataaa 16435887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 28541840 - 28541779
Alignment:
Q  289 tccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    |||| |||||||||||||||||| |||| || ||| ||||||||| ||||||| ||||||||    
T  28541840 tcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttaccccttataaa 28541779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 9753823 - 9753878
Alignment:
Q  295 aatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9753823 aatacttgaccttctcaaatttctaagcagaatttgacaaatttacctcttataaa 9753878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 13243794 - 13243738
Alignment:
Q  294 caatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  13243794 caatatttgaccttctcaaatttctaagcagaatttgacaaattcaccccttataaa 13243738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 12738613 - 12738558
Alignment:
Q  295 aatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||    
T  12738613 aatacttgaccttatcagatttctaagcagaatttgacaaatttaccccttataaa 12738558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 18575074 - 18575136
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||| |||||||||| |||| |||||| ||||||||||||||| ||||||||||    
T  18575074 gtcccacaatactcgaccttctcagatttctaagcaaaatttgacaaatttatctcttataaa 18575136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 27820819 - 27820881
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  27820819 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 27820881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 39906956 - 39907018
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  39906956 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 39907018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 17336217 - 17336162
Alignment:
Q  295 aatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||||||| | |||| |||||||||||||||| ||||||| ||||||||    
T  17336217 aatacttgaccttcttagatttctaagcagaatttgacagatttaccccttataaa 17336162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 9753770 - 9753798
Alignment:
Q  278 tactccctccgtccctcaatacttgacct 306  Q
    |||||||||||||||||||||||||||||    
T  9753770 tactccctccgtccctcaatacttgacct 9753798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Complemental strand, 9754069 - 9754041
Alignment:
Q  278 tactccctccgtccctcaatacttgacct 306  Q
    |||||||||||||||||||||||||||||    
T  9754069 tactccctccgtccctcaatacttgacct 9754041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 69799 - 69861
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||    
T  69799 gtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccgcttataaa 69861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 40232369 - 40232307
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||    
T  40232369 gtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccccttataaa 40232307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 48838106 - 48838168
Alignment:
Q  288 gtccctcaatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||||    
T  48838106 gtcccacaatacttgactttctcagatttttaagcagaatttgacaaatttaccccttataaa 48838168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 21443052 - 21442990
Alignment:
Q  288 gtccctcaatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| ||||| ||| ||||||||||||||||| | ||||||||    
T  21443052 gtcccacaatacttgaccttctcagatttttaagtagaatttgacaaatttatcccttataaa 21442990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 24300398 - 24300336
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||| |||||||| |||||| ||||||||| ||||||| ||||||||    
T  24300398 gtcccacaatacttgaccttatcaaatttctaagcaaaatttgacagatttaccccttataaa 24300336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 25943899 - 25943837
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  25943899 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 25943837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 38276799 - 38276737
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||| ||| |||| |||||||||||||||| ||||||| ||||||||    
T  38276799 gtcccacaatacttgaccttttcatatttctaagcagaatttgacagatttaccccttataaa 38276737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 31689607 - 31689547
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttata 347  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||    
T  31689607 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttata 31689547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 4040993 - 4041055
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||  ||||||| ||||||||    
T  4040993 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacggatttaccccttataaa 4041055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 22337764 - 22337818
Alignment:
Q  295 aatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataa 348  Q
    ||||||||||||||||||||||| ||||| || ||||||| |||||| |||||||    
T  22337764 aatacttgaccttctcaaattttaaagcaaaaattgacaattttaccccttataa 22337818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 29737451 - 29737513
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||| | |||| |||||| ||||||||| ||||||| ||||||||    
T  29737451 gtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaa 29737513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Complemental strand, 21443098 - 21443070
Alignment:
Q  278 tactccctccgtccctcaatacttgacct 306  Q
    |||||||||||||||||||||||||||||    
T  21443098 tactccctccgtccctcaatacttgacct 21443070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Complemental strand, 38276845 - 38276817
Alignment:
Q  278 tactccctccgtccctcaatacttgacct 306  Q
    |||||||||||||||||||||||||||||    
T  38276845 tactccctccgtccctcaatacttgacct 38276817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 2970918 - 2970856
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||    
T  2970918 gtcccacaatacttgacattctcaaatttctaagcagaatttgacaaatttaccccgtataaa 2970856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 33403247 - 33403301
Alignment:
Q  295 aatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataa 348  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||    
T  33403247 aatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 33403301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 42897628 - 42897566
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  42897628 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 42897566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 306
Target Start/End: Complemental strand, 2970967 - 2970936
Alignment:
Q  275 tactactccctccgtccctcaatacttgacct 306  Q
    ||||||||||||||||||||||||||||||||    
T  2970967 tactactccctccgtccctcaatacttgacct 2970936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 14044109 - 14044164
Alignment:
Q  295 aatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    |||| |||||||||||| |||| |||||| ||||||||| ||||||||||||||||    
T  14044109 aatatttgaccttctcagatttctaagcaaaatttgacagatttacctcttataaa 14044164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 36982232 - 36982294
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| || ||| ||||||||| ||||||| ||||||||    
T  36982232 gtcccacaatacttgaccttctcatatttctaggcaaaatttgacagatttaccccttataaa 36982294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 4828343 - 4828281
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||| ||||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  4828343 gtcccacaatatttgaccttctcaaatttctaagcaaaatttgacaaatttaccccttataaa 4828281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 16964861 - 16964924
Alignment:
Q  287 cgtccctcaatacttgaccttctcaaa-ttttaagcagaatttgacaaatttacctcttataaa 349  Q
    |||||| |||||||||||||||||||| ||||||| | |||||||||| |||||| ||||||||    
T  16964861 cgtcccacaatacttgaccttctcaaatttttaagtaaaatttgacaagtttaccccttataaa 16964924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 42847154 - 42847099
Alignment:
Q  295 aatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||    
T  42847154 aatacttgaccttttcagatttttaagcagaatttgacaaatttaccccttataaa 42847099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 29194034 - 29194096
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  29194034 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 29194096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 31922086 - 31922032
Alignment:
Q  295 aatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataa 348  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||    
T  31922086 aatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 31922032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 45080672 - 45080610
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  45080672 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 45080610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 2110266 - 2110328
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||| ||| |||| |||||| ||||||||| ||||||| ||||||||    
T  2110266 gtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccccttataaa 2110328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 43370720 - 43370782
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||| | |||| |||||| ||||||||| ||||||| ||||||||    
T  43370720 gtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaa 43370782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Complemental strand, 1779372 - 1779344
Alignment:
Q  278 tactccctccgtccctcaatacttgacct 306  Q
    |||||||||||||||||||||||||||||    
T  1779372 tactccctccgtccctcaatacttgacct 1779344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 16964811 - 16964839
Alignment:
Q  276 actactccctccgtccctcaatacttgac 304  Q
    |||||||||||||||||||||||||||||    
T  16964811 actactccctccgtccctcaatacttgac 16964839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 46370973 - 46371035
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||    
T  46370973 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacaaatttaccccttataaa 46371035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 1929470 - 1929408
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  1929470 gtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttaccccttataaa 1929408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 40562688 - 40562626
Alignment:
Q  288 gtccctcaatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||| |||||| ||||| ||||||||||||| ||||||||| ||||||||    
T  40562688 gtcccacaatacttgacattctcatatttttaagcagaatttgataaatttaccccttataaa 40562626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 1207697 - 1207643
Alignment:
Q  295 aatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  1207697 aatacttgaccttctcagatttctaagcagaatttgacagatttacc-cttataaa 1207643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 8229112 - 8229171
Alignment:
Q  291 cctcaatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||| ||||||| | ||||| ||||| ||||||||||||||||| ||||||||    
T  8229112 cctcaatacttaaccttcttagatttttaagcaaaatttgacaaatttaccccttataaa 8229171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 50777050 - 50777105
Alignment:
Q  295 aatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||||||| |||||| |||||| ||||||||| ||||||| ||||||||    
T  50777050 aatacttgaccttcttaaatttctaagcaaaatttgacagatttaccccttataaa 50777105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 28036955 - 28036893
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||| | ||||||||    
T  28036955 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttatcccttataaa 28036893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 39151151 - 39151089
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||| | |||| |||||| ||||||||| ||||||| ||||||||    
T  39151151 gtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaa 39151089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 46862602 - 46862664
Alignment:
Q  288 gtccctcaatacttgaccttctca-aattttaagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||| | | ||||||||| ||||||||| ||||||| ||||||||    
T  46862602 gtcccacaatacttgaccttcttagatttttaagcaaaatttgacagatttaccccttataaa 46862664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 32045885 - 32045941
Alignment:
Q  294 caatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    |||||||||||||||||| |||| |||||| ||||||| | ||||||| ||||||||    
T  32045885 caatacttgaccttctcagatttctaagcaaaatttgaaagatttaccccttataaa 32045941  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 40562436 - 40562464
Alignment:
Q  278 tactccctccgtccctcaatacttgacct 306  Q
    |||||||||||||||||||||||||||||    
T  40562436 tactccctccgtccctcaatacttgacct 40562464  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 349
Target Start/End: Complemental strand, 47603809 - 47603765
Alignment:
Q  306 ttctcaaatttt-aagcagaatttgacaaatttacctcttataaa 349  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||    
T  47603809 ttctcaaatttttaagcagaatttgacaagtttaccccttataaa 47603765  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 30459852 - 30459913
Alignment:
Q  288 gtccctcaatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataa 348  Q
    |||||| ||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||    
T  30459852 gtccctaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 30459913  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 41346093 - 41346155
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  41346093 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 41346155  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 50676521 - 50676583
Alignment:
Q  288 gtccctcaatacttgaccttctca-aattttaagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| | ||||||||| ||||||||| ||||||| ||||||||    
T  50676521 gtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttaccccttataaa 50676583  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 51545708 - 51545770
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  51545708 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 51545770  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 54014283 - 54014345
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  54014283 gtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 54014345  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 12568262 - 12568200
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||| |||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  12568262 gtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttaccccttataaa 12568200  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 13544726 - 13544664
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||| |||||| |||| |||||| ||||||||| ||||||| ||||||||    
T  13544726 gtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttaccccttataaa 13544664  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 40496819 - 40496881
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| ||| || ||||||||| ||||||| ||||||||    
T  40496819 gtcccacaatacttgaccttctcagatttctaaacaaaatttgacagatttaccccttataaa 40496881  T

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Target: scaffold0532 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 3867 - 3922
Alignment:
Q  295 aatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||    
T  3867 aatacttgaccttctcagatttctaagcaaaatttgacagatttacctcttataaa 3922  T

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Target: scaffold1194 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 1025 - 1087
Alignment:
Q  288 gtccctcaatacttgaccttctcaaatttt-aagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||| ||||||| ||||| |||||| |||||||||||||||| ||||||||    
T  1025 gtcccacaatacttgagcttctcagatttttaagcaggatttgacaaatttaccccttataaa 1087  T

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Target: scaffold0318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 16403 - 16465
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||  |||||||    
T  16403 gtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccctttataaa 16465  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 10271 - 10209
Alignment:
Q  288 gtccctcaatacttgaccttctcaaattt-taagcagaatttgacaaatttacctcttataaa 349  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| ||||| | ||||||||    
T  10271 gtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttatcccttataaa 10209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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