View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-23 (Length: 307)
Name: NF4658-Insertion-23
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-23 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 46502492 - 46502383
Alignment:
| Q |
8 |
gggtactcatgtgcttgtagcatggtttaagaacctcttactgagtgttctttaattgtacgaatttaaaaatcaccaatacaaaagatgattctcctta |
107 |
Q |
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| T |
46502492 |
gggtactcatgtgcttgtagcatggtttaagaacctcttactgagtgttctttaattgtacgaatttaaaaatcaccaatacaaaagatgattctcctta |
46502393 |
T |
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| Q |
108 |
ctgttacctc |
117 |
Q |
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| T |
46502392 |
ctgttacctc |
46502383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 46502292 - 46502236
Alignment:
| Q |
212 |
aaatgagattcatattctcctacaatttcaaatcaaaacctcattaatggttaatat |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46502292 |
aaatgagattcatattctcctacaatttcaaatcaaaacctcattaatggttaatat |
46502236 |
T |
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