View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4658-Insertion-4 (Length: 897)

Name: NF4658-Insertion-4
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4658-Insertion-4
NF4658-Insertion-4
[»] chr8 (1 HSPs)
chr8 (8-897)||(36376217-36377091)
[»] scaffold0034 (1 HSPs)
scaffold0034 (92-252)||(90330-90490)


Alignment Details
Target: chr8 (Bit Score: 752; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 8 - 897
Target Start/End: Original strand, 36376217 - 36377091
Alignment:
Q  8 tccttggcttcttacttctgtctgcatgtttctaatgaatgtgcatcatttgaatttgaatcacttcgttcttataatcaaatggacaggtaataatggg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376217 tccttggcttcttacttctgtctgcatgtttctaatgaatgtgcatcatttgaatttgaatcacttcgttcttataatcaaatggacaggtaataatggg 36376316  T
Q  108 tgttgatcgtcttgatatgataaaaggaattccccagaaaatcttggcattcgagaagttccttgaggagaattctcattggcgtgataaagttgtcttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376317 tgttgatcgtcttgatatgataaaaggaattccccagaaaatcttggcattcgagaagttccttgaggagaattctcattggcgtgataaagttgtcttg 36376416  T
Q  208 ctgcaaattgctgtacctactaggacagatgttcctgaatgtatgttacttctttaggcatgttattatctcttgaagcatgttttttctattgatttag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376417 ctgcaaattgctgtacctactaggacagatgttcctgaatgtatgttacttctttaggcatgttattatctcttgaagcatgttttttctattgatttag 36376516  T
Q  308 gagtatttctagtgtcaaactctcagtcacacgccaaagaacacaccctctattcagtgccacgtcccccatttcattaaacctataccaggcaactggc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36376517 gagtatttctagtgtcaaactctcagtcacacgccaaagaacacaccctctattcagtgccacgtcccccatttcattaaacctataccaggcaaccggc 36376616  T
Q  408 tctgcaactaacaacgtgtttcttcacgtccttctctctcgccaagcaaaaacctttgtaagttgtaactagccaccggcaccctcgcctccacccacac 507  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376617 tctgcaactaacaacgtgtttcttcacgtccttctctctcaccaagcaaaaacctttgtaagttgtaactagccaccggcaccctcgcctccacccacac 36376716  T
Q  508 cgccaatcccgacgcaaccatcctgtcgcacaaccatcctggttcttattatcaccattgtttttgtttctactccaccgcgtcggcattgtaaaacaga 607  Q
    ||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36376717 cgccaatcccgacg----------------caaccatcctggttcttattatcaccattgtttttgtttctactccaccgtgtcggcattgtaaaacaga 36376800  T
Q  608 tattatttcttcnnnnnnnggagagacaagaaaaactgaaaacaatagttacagcagaagcactgaagcagtgtctttatgagagagaaatgggttatat 707  Q
    ||||||||||||       ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376801 tattatttcttctttttttggagaaacaagaaaaaccg-aaacaatagttacagcagaagcactgaagcagtgtctttatgagagagaaatgggttatat 36376899  T
Q  708 tattaaaacacgctcaacatttagattggtctcgtattgcaaaaattattaaaagcagggaatttgttttgaaagtgatggaagctttactgtc--nnnn 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  36376900 tattaaaacacgctcaacatttagattggtctcgtattgcaaaaattattaaaagcagggaatttgttttgaaagtgatggaagctttactgtcaaaaaa 36376999  T
Q  806 nnnnnctgatgcaagctttaattacgaattactggatcctataaagggctgatttgtcaatggagttatatttccattacacgcggtactaa 897  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36377000 aaaaactgatgcaagctttaattacgaattactggatcctataaagggctgatttgtcaatggagttatatttccattacacgcggtactaa 36377091  T

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Target: scaffold0034 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 92 - 252
Target Start/End: Complemental strand, 90490 - 90330
Alignment:
Q  92 gacaggtaataatgggtgttgatcgtcttgatatgataaaaggaattccccagaaaatcttggcattcgagaagttccttgaggagaattctcattggcg 191  Q
    ||||||||||  |||| |||||||| ||||||||||| |||||||| || ||||||||  | ||||| ||||||||  | || || ||| || |||||||    
T  90490 gacaggtaatgttgggcgttgatcgccttgatatgatcaaaggaatcccacagaaaattcttgcatttgagaagtttttggaagaaaatgcttattggcg 90391  T
Q  192 tgataaagttgtcttgctgcaaattgctgtacctactaggacagatgttcctgaatgtatg 252  Q
    ||||||||| || ||||| ||||| || || || || || ||||| |||||||||||||||    
T  90390 tgataaagtagttttgcttcaaatcgccgtcccaacaagaacagacgttcctgaatgtatg 90330  T

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