View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-6 (Length: 880)
Name: NF4658-Insertion-6
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 719; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 719; E-Value: 0
Query Start/End: Original strand, 8 - 814
Target Start/End: Complemental strand, 38927014 - 38926209
Alignment:
| Q |
8 |
actctccatgttcacttaggactatggtatcaaattctgatgggttggagaatttgatgaaggtgataagaaaaatgaagccgtttattatgacagtact |
107 |
Q |
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| T |
38927014 |
actctccatgttcacttaggactatggtatcaaattctgatggcttggagaatttgatgaaggtgataagaaaaatgaaaccgtttattatgatagtact |
38926915 |
T |
|
| Q |
108 |
tgaactggaagcaaaccataattcacctttgtttgcgaataggtttgttgaagcattgttcttttactcagcattttttgactgtgttgatacttgtata |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38926914 |
tgaacttgaagcaaaccataattcacctttgtttgcgaataggtttgttgaagcattgttcttttactcagcattttttgactgtgttgatacttgtata |
38926815 |
T |
|
| Q |
208 |
aaagaggattatgagtgtagagtaatgatggaagcaatattatctgaagggataagaaacattgttggtttggaagatgaagaaaggaaggttaggaatg |
307 |
Q |
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| T |
38926814 |
aaagaggattatgagtgtagagtaatgatggaagcaatattatctgaagggataagaaacattgttggtttggaagatgaagaaaggaaggttaggaatg |
38926715 |
T |
|
| Q |
308 |
tgaagattgatgtttggagaaggttctttgcaaggtatagaatggtggaaactggattcagtgagtcttcaatttatcaagctaatttggttactaaaaa |
407 |
Q |
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| T |
38926714 |
tgaagattgatgtttggagaaggttctttgcaaggtatagaatggtggaaactggattcagtgagtcttcaatttatcaagctaatttggttactaaaaa |
38926615 |
T |
|
| Q |
408 |
gtttgactgtgggaagttttgtactatagacaaaaatgggaagtgtttaataattggatggaaagggactccaattcattcaatctcagcttggaagttt |
507 |
Q |
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| T |
38926614 |
gtttgactgtgggaagttttgtactatagacaaaaatgggaagtgtttaataattggatggaaagggactccaattcattcaatctcagcttggaagttt |
38926515 |
T |
|
| Q |
508 |
ctttgagatacatatatgtaaaagaaattttaaacagtcaattgcaatgtatatgtatatattcctttaaaattccccaaaatgggttgtttgatcatat |
607 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38926514 |
ctttgagataaatatatgtaaaagaaattttaaacactcaattacaatgtatatgtatacattcctttaaaattccccaaaatgggttgtttgatcatat |
38926415 |
T |
|
| Q |
608 |
tagggaaaatgcatgtttgagttgacggatagattgaaaaattactacgacatcatgattttgttaaagctctaaagtatatgaaattagagtggcacgc |
707 |
Q |
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| T |
38926414 |
tagggaaaatgcatgtttgagttgacggatatattgagaacttactacgacatcatgattttgttaaagctctaaagtatatgaaattagagaggcacac |
38926315 |
T |
|
| Q |
708 |
tcattctgtcaaatccatacatatgggtcgaatccttcgtaaaaataattagataactcaagtatttatcacttgtgtcacacccatattgttaactctt |
807 |
Q |
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| T |
38926314 |
tcattctgtcaaatccatacatatgggtcgaatcctttgtgaaaataattagatgactcaagtatttatcacttgtgttaca-ccatgttattaagtctt |
38926216 |
T |
|
| Q |
808 |
agattaa |
814 |
Q |
| |
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||||||| |
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| T |
38926215 |
agattaa |
38926209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 809 - 875
Target Start/End: Complemental strand, 38926184 - 38926118
Alignment:
| Q |
809 |
gattaaattaattaaacacccaatcctttgcactcactttcttttccctttatgattgaactcgcag |
875 |
Q |
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| T |
38926184 |
gattaaattaattaaacacgcaatcctttgcactcactttcttttccatttatgattgaactcgcag |
38926118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 5e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 218 - 513
Target Start/End: Complemental strand, 44837325 - 44837030
Alignment:
| Q |
218 |
atgagtgtagagtaatgatggaagcaatattatctgaagggataagaaacattgttggtttggaagatgaagaaaggaaggttaggaatgtgaagattga |
317 |
Q |
| |
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||||||||||| | || | |||| |||| |||||| |||| ||||||| ||||||| | |||| | |||||||| ||||| |||||||| ||||| |
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| T |
44837325 |
atgagtgtagaatgataacagaaggaatactatctgtagggttaagaaatattgttgcgtcagaaggtagagaaaggactgttagaaatgtgaaaattga |
44837226 |
T |
|
| Q |
318 |
tgtttggagaaggttctttgcaaggtatagaatggtggaaactggattcagtgagtcttcaatttatcaagctaatttggttactaaaaagtttgactgt |
417 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| | || |||||| | | |||| |||||| | ||||| | |||| ||||||| | |
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| T |
44837225 |
tgtttggagaagattctttgcaaggtatagaatggtggaaactaggtttagtgaggcatgtgtttaccaagctgaattggtgagtaaagagtttgatgat |
44837126 |
T |
|
| Q |
418 |
gggaagttttgtactatagacaaaaatgggaagtgtttaataattggatggaaagggactccaattcattcaatctcagcttggaagtttctttga |
513 |
Q |
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| T |
44837125 |
gggaaattttgcgatgtggaaaagaatgggaagtgtttgatattgggatggaaggggactccaatgtattcaatctcagcttggaggtttctttga |
44837030 |
T |
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