View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4658-Insertion-7 (Length: 844)

Name: NF4658-Insertion-7
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4658-Insertion-7
NF4658-Insertion-7
[»] chr2 (2 HSPs)
chr2 (449-666)||(22018619-22018836)
chr2 (474-666)||(20714180-20714372)
[»] chr4 (3 HSPs)
chr4 (589-662)||(21261870-21261943)
chr4 (779-844)||(21261607-21261672)
chr4 (91-134)||(56049877-56049920)
[»] scaffold0097 (1 HSPs)
scaffold0097 (473-666)||(18019-18212)
[»] chr8 (2 HSPs)
chr8 (473-666)||(22527881-22528074)
chr8 (473-666)||(25990502-25990695)
[»] chr6 (2 HSPs)
chr6 (473-666)||(33094496-33094689)
chr6 (84-141)||(34547214-34547271)
[»] chr5 (1 HSPs)
chr5 (473-666)||(13173069-13173262)
[»] chr3 (1 HSPs)
chr3 (473-666)||(20986582-20986775)
[»] scaffold1789 (1 HSPs)
scaffold1789 (473-666)||(970-1163)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 449 - 666
Target Start/End: Complemental strand, 22018836 - 22018619
Alignment:
Q  449 gaggtgtttaaaatgagctcagaggagttggtcaaacagagtaagagtggtgatggtggagatatttgggctgaattagtcgaaattggtgttgaaccag 548  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||     
T  22018836 gaggtgtttaaaatgagctcagaggagttggtcaaatagagtaagagtgctaatggtggagatatttgggctgaattagttgaaattggtgttgaaccaa 22018737  T
Q  549 cttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatct 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  22018736 cttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccacaaagaaatgttacatct 22018637  T
Q  649 cattgtgcccgactatcc 666  Q
    ||||||||||||||||||    
T  22018636 cattgtgcccgactatcc 22018619  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 474 - 666
Target Start/End: Complemental strand, 20714372 - 20714180
Alignment:
Q  474 agttggtcaaacagagtaagagtggtgatggtggagatatttgggctgaattagtcgaaattggtgttgaaccagcttccttgcctaaagtatacatgta 573  Q
    ||||||||||||||| |||||||  |  || || |||| |||||||| | || ||||| ||||||||||||  |||||||||||||   || |||||| |    
T  20714372 agttggtcaaacagaataagagttctagtgatgaagatgtttgggctaacttggtcgagattggtgttgaagaagcttccttgccttgtgtctacatgca 20714273  T
Q  574 ccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 666  Q
    ||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  20714272 ccttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 20714180  T

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Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 589 - 662
Target Start/End: Complemental strand, 21261943 - 21261870
Alignment:
Q  589 tgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgact 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21261943 tgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgact 21261870  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 779 - 844
Target Start/End: Complemental strand, 21261672 - 21261607
Alignment:
Q  779 atagtttgatgacaattgttttggtagttaattattattgtcattctggtgctataaagtggaaga 844  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  21261672 atagtttgatgacaattgttttggtaattaattattattgtcattctggtgctataaagtgaaaga 21261607  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 56049877 - 56049920
Alignment:
Q  91 gacaccaataataatatgagaaatgacatagtttaatgtaatca 134  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||    
T  56049877 gacaccgataataatttgagaaatgacatagttcaatgtaatca 56049920  T

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Target: scaffold0097 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 473 - 666
Target Start/End: Complemental strand, 18212 - 18019
Alignment:
Q  473 gagttggtcaaacagagtaagagtggtgatggtggagatatttgggctgaattagtcgaaattggtgttgaaccagcttccttgcctaaagtatacatgt 572  Q
    |||||||||||||||| |||||||  |  || || |||| |||||||| | || ||||| ||||||||||||  |||||||||||||   || ||||||     
T  18212 gagttggtcaaacagaataagagttctagtgctgaagatgtttgggctaacttggtcgagattggtgttgaagaagcttccttgccttgtgtctacatgc 18113  T
Q  573 accttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 666  Q
    |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  18112 accttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 18019  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 473 - 666
Target Start/End: Complemental strand, 22528074 - 22527881
Alignment:
Q  473 gagttggtcaaacagagtaagagtggtgatggtggagatatttgggctgaattagtcgaaattggtgttgaaccagcttccttgcctaaagtatacatgt 572  Q
    |||||||||||||||| |||||||  |  || || |||| |||||||| | || ||||| ||||||||||||  |||||||||||||   || ||||||     
T  22528074 gagttggtcaaacagaataagagttctagtgctgaagatgtttgggctaacttggtcgagattggtgttgaagaagcttccttgccttgtgtctacatgc 22527975  T
Q  573 accttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 666  Q
    |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  22527974 accttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 22527881  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 473 - 666
Target Start/End: Complemental strand, 25990695 - 25990502
Alignment:
Q  473 gagttggtcaaacagagtaagagtggtgatggtggagatatttgggctgaattagtcgaaattggtgttgaaccagcttccttgcctaaagtatacatgt 572  Q
    |||||||||||||||| |||||||  |  || || |||| |||||||| | || ||||| ||||||||||||  |||||||||||||   || ||||||     
T  25990695 gagttggtcaaacagaataagagttctagtgctgaagatgtttgggctaacttggtcgagattggtgttgaagaagcttccttgccttgtgtctacatgc 25990596  T
Q  573 accttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 666  Q
    |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  25990595 accttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 25990502  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 473 - 666
Target Start/End: Original strand, 33094496 - 33094689
Alignment:
Q  473 gagttggtcaaacagagtaagagtggtgatggtggagatatttgggctgaattagtcgaaattggtgttgaaccagcttccttgcctaaagtatacatgt 572  Q
    |||||||||||||||| |||||||  |  || || |||| |||||||| | || ||||| ||||||||||||  |||||||||||||   || ||||||     
T  33094496 gagttggtcaaacagaataagagttctagtgctgaagatgtttgggctaacttggtcgagattggtgttgaagaagcttccttgccttgtgtctacatgc 33094595  T
Q  573 accttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 666  Q
    |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  33094596 accttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 33094689  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 34547271 - 34547214
Alignment:
Q  84 gacacttgacaccaataataatatgagaaatgacatagtttaatgtaatcacgtgtgt 141  Q
    |||||| ||||  ||||||||| ||| |||||||||| |||||||||||||| |||||    
T  34547271 gacactagacaagaataataatttgaaaaatgacataatttaatgtaatcacatgtgt 34547214  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 473 - 666
Target Start/End: Complemental strand, 13173262 - 13173069
Alignment:
Q  473 gagttggtcaaacagagtaagagtggtgatggtggagatatttgggctgaattagtcgaaattggtgttgaaccagcttccttgcctaaagtatacatgt 572  Q
    |||||||||||||||| |||||||  |  || || |||| |||||||| | || ||||| ||||||||||||  |||||||||||||   || ||||||     
T  13173262 gagttggtcaaacagaataagagttctagtgctgaagatgtttgggctaacttggtcgagattggtgttgaagaagcttccttgccttgtgtctacatgc 13173163  T
Q  573 accttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 666  Q
    |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  13173162 accttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 13173069  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 473 - 666
Target Start/End: Original strand, 20986582 - 20986775
Alignment:
Q  473 gagttggtcaaacagagtaagagtggtgatggtggagatatttgggctgaattagtcgaaattggtgttgaaccagcttccttgcctaaagtatacatgt 572  Q
    |||||||||||||||| |||||||  |  || || |||| |||||||| | || ||||| ||||||||||||  |||||||||||||   || ||||||     
T  20986582 gagttggtcaaacagaataagagttctagtgctgaagatgtttgggctaacttggtcgagattggtgttgaagaagcttccttgccttgtgtctacatgc 20986681  T
Q  573 accttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 666  Q
    |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  20986682 accttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 20986775  T

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Target: scaffold1789 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold1789
Description:

Target: scaffold1789; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 473 - 666
Target Start/End: Original strand, 970 - 1163
Alignment:
Q  473 gagttggtcaaacagagtaagagtggtgatggtggagatatttgggctgaattagtcgaaattggtgttgaaccagcttccttgcctaaagtatacatgt 572  Q
    |||||||||||||||| |||||||  |  || || |||| |||||||| | || ||||| ||||||||||||  ||| |||||||||   || ||||||     
T  970 gagttggtcaaacagaataagagttctagtgctgaagatgtttgggctaacttggtcgagattggtgttgaagaagcatccttgccttgtgtctacatgc 1069  T
Q  573 accttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 666  Q
    |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  1070 accttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 1163  T

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