View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658-Insertion-8 (Length: 717)
Name: NF4658-Insertion-8
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 612; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 8 - 717
Target Start/End: Complemental strand, 41387556 - 41386846
Alignment:
| Q |
8 |
caaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacgcagcccttggagcatcatctccagcaaatccagcctaaacgttgcaaatcac |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41387556 |
caaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacacagcccttggagcatcatctccagcaaatccagcctaaacgttgcaaatcac |
41387457 |
T |
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| Q |
108 |
aatgcaatagtttcacagcaaagtagtagaaagtgagaatcgaagattgcagaaaatagcagttcattcaaattcttctatgcaatagtgttattgactt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41387456 |
aatgcaatagtttcacagcaaagtagtagaaagtgagaatcgaagattgcagaaaatagcagttcattcaaattcttctatgcaatagttttattgactt |
41387357 |
T |
|
| Q |
208 |
atatagcagctctttaacagcaacatttagtactagatagtgtatcacaaaacaatattgatttgttcaaattttgctacattgctataactattattta |
307 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41387356 |
atatagcagctctttaacaacaacatttagtactagatagtgaatcacaaaacaatattgatttgttcaaatttcgctacattgctataactattattta |
41387257 |
T |
|
| Q |
308 |
acaaacaccgaagagaaaacagaaaagatacatagccaaatcgcttcttcaggaaaaattgtgaaactagaatcacatttgtactttaccttaaccattc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41387256 |
acaaacaccgaagagaaaacagaaaagatacatagccaaatcgcttcttcaggaaaaattgtgaaactagaatcacatttgtactttaccttaaccattc |
41387157 |
T |
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| Q |
408 |
ctgttccattatcacagaccagtggctgaatatcctccgcgtctgccattgtctttcaaaatctgcacaaaccatacattccttctcactgcattgaaag |
507 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41387156 |
ctgttccattatcacagaccagtggctgaatatcctcggcgtctgccattgtctttcaaaatctgcacaaaccatacattccttctcagtgcattgaaag |
41387057 |
T |
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| Q |
508 |
acaacaccaagtgcaattccaaacaattt---tnnnnnnnncatgttaaattttctcaccattacttattacatctatttctacacctcactaattattt |
604 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41387056 |
acaacaccaagtgcaattccaaacaatttaaaaaaaaaaaacatcttaaattttctcaccattacttattacatctatttctacacctcactaattattt |
41386957 |
T |
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| Q |
605 |
tcttacacttatcacactatttagattaccataacatgtttggcacattatatcgcaatcacattatgtagaactcttaaaagcaatttagatatttttg |
704 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
41386956 |
tcttacacttat--cactatttagattaccataacatgtttggcacaatatatcacaatcacattatgtacaactcttcaaagcaatttagatatttttg |
41386859 |
T |
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| Q |
705 |
ttttgttttaaat |
717 |
Q |
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||||||||||||| |
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| T |
41386858 |
ttttgttttaaat |
41386846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 11530072 - 11530023
Alignment:
| Q |
237 |
gtactagatagtgtatcacaaaacaatattgatttgttcaaattttgcta |
286 |
Q |
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|||||| |||||||||| || ||||||| |||||||||||||||| |||| |
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| T |
11530072 |
gtactaaatagtgtatcgcagaacaatagtgatttgttcaaatttcgcta |
11530023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 67093 - 67010
Alignment:
| Q |
8 |
caaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacgcagcccttggagcatcatctccagcaaatccagcct |
91 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||||||||| ||||||||||||| |
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| T |
67093 |
caaccatcacaccggtgtggcgtggtcgacctacaatactagggaacaccgcccttggtgcatcatctccggcaaatccagcct |
67010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 394 - 457
Target Start/End: Complemental strand, 66451 - 66388
Alignment:
| Q |
394 |
taccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtctgccatt |
457 |
Q |
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||||||||||||||| |||||||||||||| || || || ||||||||||| || ||||||||| |
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| T |
66451 |
taccttaaccattccagttccattatcacaaacaagaggttgaatatcctcagcatctgccatt |
66388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 43647886 - 43647969
Alignment:
| Q |
8 |
caaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacgcagcccttggagcatcatctccagcaaatccagcct |
91 |
Q |
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||||||| |||||||| || || ||||| |||||||| || |||||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
43647886 |
caaccatgacaccggtatgacgaggtcggccaacaatacttggaaacacagccctaggagcatcatcaccagcaaatccagcct |
43647969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 8688747 - 8688664
Alignment:
| Q |
8 |
caaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaaacgcagcccttggagcatcatctccagcaaatccagcct |
91 |
Q |
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||||||||||||| ||||| || || ||||| |||||||| |||||| |||| | || ||||||||||||||||||||||||| |
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| T |
8688747 |
caaccatcacaccagtgtgacgaggacgacctacaatgctgggaaacacagcacgaggggcatcatctccagcaaatccagcct |
8688664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 394 - 461
Target Start/End: Complemental strand, 8688093 - 8688026
Alignment:
| Q |
394 |
taccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtctgccattgtct |
461 |
Q |
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||||||||||||||| |||||||| ||||| || || || ||||||||||| ||||||||||| |||| |
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| T |
8688093 |
taccttaaccattccagttccattgtcacaaacaagaggttgaatatcctcagcgtctgccatcgtct |
8688026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 41399579 - 41399636
Alignment:
| Q |
228 |
caacatttagtactagatagtgtatcacaaaacaatattgatttgttcaaattttgct |
285 |
Q |
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|||||||| |||||| |||||||||||| ||||||||||||| ||||||||||||| |
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| T |
41399579 |
caacattttgtactaaatagtgtatcacggcacaatattgatttattcaaattttgct |
41399636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 2722233 - 2722277
Alignment:
| Q |
246 |
agtgtatcacaaaacaatattgatttgttcaaattttgctacatt |
290 |
Q |
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| T |
2722233 |
agtgtatcacataacaatattcatttgtttaaattttgctacatt |
2722277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 21869915 - 21869856
Alignment:
| Q |
228 |
caacatttagtactagatagtgtatcacaaaacaatattgatttgttcaaattttgctac |
287 |
Q |
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|||||||| |||||| |||||||||||| ||||||| |||||||||| |||| |||||| |
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| T |
21869915 |
caacattttgtactaaatagtgtatcacggaacaataatgatttgttcgaattctgctac |
21869856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 60453 - 60515
Alignment:
| Q |
394 |
taccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtctgccat |
456 |
Q |
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|||||| |||||||| |||||||| ||||| || || || ||||||||||| ||||||||||| |
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| T |
60453 |
taccttgaccattccagttccattgtcacaaacaagaggttgaatatcctcagcgtctgccat |
60515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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