View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4658-Insertion-9 (Length: 650)

Name: NF4658-Insertion-9
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4658-Insertion-9
NF4658-Insertion-9
[»] chr5 (1 HSPs)
chr5 (7-650)||(9756026-9756669)


Alignment Details
Target: chr5 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 7 - 650
Target Start/End: Original strand, 9756026 - 9756669
Alignment:
Q  7 agatgatcctccaagatcattaatatcattggtatgataaacactcaatgcagtagctcgagatgaggattcttggtagacatgatgccattcagagttt 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9756026 agatgatcctgcaagatcattaatatcattggtatgataaacactcaatgcagtagctcgagatgaggattcttggtagacatgatgccattcagagttt 9756125  T
Q  107 gataaccgatcatcagaaccagagttacctatttgtgttgctgaataccatgaatctagagggagacaattttcttcaggccatgcttttacaagaaaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9756126 gataaccgatcatcagaaccagagttacctatttgtgttgctgaataccatgaatctagagggagacaattttcttcaggccatgcttttacaagaaaat 9756225  T
Q  207 cagaatcttcagacatctttaannnnnnngcaacttctacacagggacgggtgtataaatccttactaccactgcaaaaatcctcccctaggttttgctt 306  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9756226 cagaatcttcagacatctttaatttttttgcaacttctacacagggacgggtgtataaatccttactaccactgcaaaaatcctcccctaggttttgctt 9756325  T
Q  307 actccaaaagctatcggtttggagttgaagttcatcatttacaagcaaagtcttctcattcaggatactatctttttgtgtagagcagctctttagaaaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9756326 actccaaaagctatcggtttggagttgaagttcatcatttacaagcaaagtcttctcgttcaggatactatctttttgtgtagagcagctctttagaaaa 9756425  T
Q  407 ggcttttgaaaattccaaccaatctcttcatcataaccgaacccatggcattcataaccttcaaatgattcacagatcatgccagcatcttcttcattta 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9756426 ggcttttgaaaattccaaccaatctcttcatcataaccgaacccatggcattcataaccttcaaatgattcacagatcatgccagcatcttcttcattta 9756525  T
Q  507 attttcttccacgtgaagaacttctcgcataagaaggaatattatcatagaaactttcggcagcaggacacataccatccaaaaagtgaactccttgcca 606  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9756526 attttcttccacgtgaagaacttcttgcataagaaggaatattatcatagaaactttcggcagcaggacacataccatccaaaaagtgaactccttgcca 9756625  T
Q  607 taaatcattgttatcatacgtcaaaaaactgttactctttttca 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9756626 taaatcattgttatcatacgtcaaaaaactgttactctttttca 9756669  T

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