View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4658_high_11 (Length: 410)

Name: NF4658_high_11
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4658_high_11
NF4658_high_11
[»] chr7 (4 HSPs)
chr7 (1-396)||(18479327-18479722)
chr7 (69-393)||(38845049-38845373)
chr7 (1-74)||(18484161-18484234)
chr7 (271-324)||(14236652-14236705)
[»] chr8 (6 HSPs)
chr8 (1-396)||(19873488-19873884)
chr8 (1-74)||(21032129-21032201)
chr8 (227-333)||(2998692-2998798)
chr8 (173-327)||(44231278-44231432)
chr8 (224-276)||(29218623-29218675)
chr8 (224-324)||(35619863-35619963)
[»] chr6 (12 HSPs)
chr6 (40-322)||(28294398-28294679)
chr6 (40-322)||(28517394-28517675)
chr6 (323-396)||(28294296-28294369)
chr6 (323-396)||(28517704-28517777)
chr6 (227-393)||(34825926-34826092)
chr6 (271-324)||(22845146-22845199)
chr6 (1-44)||(28294705-28294748)
chr6 (1-44)||(28517325-28517368)
chr6 (1-44)||(28522175-28522218)
chr6 (227-393)||(33461769-33461935)
chr6 (200-335)||(34069035-34069170)
chr6 (227-281)||(6567608-6567662)
[»] chr1 (5 HSPs)
chr1 (69-393)||(47705128-47705452)
chr1 (1-44)||(14507096-14507139)
chr1 (245-333)||(23415494-23415582)
chr1 (227-288)||(18008367-18008428)
chr1 (227-324)||(52779949-52780046)
[»] chr3 (7 HSPs)
chr3 (69-356)||(17477276-17477563)
chr3 (227-393)||(37194206-37194372)
chr3 (227-335)||(55312228-55312336)
chr3 (227-324)||(19584625-19584722)
chr3 (271-333)||(4676203-4676265)
chr3 (227-324)||(12298669-12298766)
chr3 (173-321)||(44666370-44666518)
[»] chr5 (5 HSPs)
chr5 (40-226)||(19409930-19410114)
chr5 (1-79)||(42133529-42133607)
chr5 (224-321)||(26464704-26464801)
chr5 (1-44)||(19409861-19409904)
chr5 (226-327)||(20238075-20238176)
[»] scaffold1939 (1 HSPs)
scaffold1939 (1-74)||(1120-1193)
[»] scaffold0933 (1 HSPs)
scaffold0933 (1-74)||(3861-3934)
[»] chr2 (5 HSPs)
chr2 (245-324)||(29501631-29501710)
chr2 (248-321)||(20970643-20970716)
chr2 (227-335)||(13132852-13132960)
chr2 (245-324)||(27474091-27474170)
chr2 (223-324)||(34977779-34977880)
[»] chr4 (3 HSPs)
chr4 (226-334)||(22645621-22645729)
chr4 (223-321)||(17131869-17131967)
chr4 (230-335)||(35089427-35089532)
[»] scaffold0102 (2 HSPs)
scaffold0102 (245-333)||(2091-2179)
scaffold0102 (245-333)||(6444-6532)
[»] scaffold0329 (1 HSPs)
scaffold0329 (227-324)||(13278-13375)
[»] scaffold0022 (1 HSPs)
scaffold0022 (236-321)||(168063-168148)
[»] scaffold0257 (2 HSPs)
scaffold0257 (200-276)||(6881-6957)
scaffold0257 (200-276)||(8976-9052)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 18479327 - 18479722
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactctaatagtaaagctaaaaacatgaaaagtaatagtctccctcaagttggaggtttgtat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  18479327 tatgctaagtactgtgaactagcaactagagaattgctactctaatagtaaagctaaaaacatgaaaagtaatagtccccctcaagttggaggtttgtgt 18479426  T
Q  101 atatcaactaaacccaacttgaacaacaaagaattgaaaagctgaggatgaagggacttagtnnnnnnntctgcaagttgatttttagaggaaatgggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||       |||||||||||||||||||||||||||||||    
T  18479427 atatcaactaaacccaacttgaacaacaaagaattgaaaggctgaggaagaatggacttagtaaaacaatctgcaagttgatttttagaggaaatgggaa 18479526  T
Q  201 gaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18479527 gaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtg 18479626  T
Q  301 aagagcactctggttatcacagtacaacacaggaattctagtgcatgtaatctgcaaatctttcaaaagatacatcagccattgaagctcacaggt 396  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18479627 aagagcactctagttatcacagtacaacacaggaattctagtgcaagtaatctgcaaatctttcaaaagatacatcagccattgaagctcacaggt 18479722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 69 - 393
Target Start/End: Original strand, 38845049 - 38845373
Alignment:
Q  69 gtaatagtctccctcaagttggaggtttgtatatatcaactaaacccaacttgaacaacaaagaattgaaaagctgaggatgaagggacttagtnnnnnn 168  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| |||||||| |||| || || ||          
T  38845049 gtaatagtccccctcaagttggaggtttgtatatatcaactaaacccaacttgaacaataaagagctgaaaggctgaggaagaagagatttggtgaagaa 38845148  T
Q  169 ntctgcaagttgatttttagaggaaatgggaagaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagtt 268  Q
     ||||||||||||||||  |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||| || ||||| || ||||| || |||    
T  38845149 atctgcaagttgattttgtgaggaaatagggagaagcttcatgattcctgctgcaagcttttctctgacaatgtgacaatcaatctctaaatgcttggtt 38845248  T
Q  269 ctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtacaacacaggaattctagtgcatgtaatctgcaaatctttcaaaa 368  Q
    |||||||| || |||||||||||||| || || | |||||| || |||||||| ||||| ||||| | ||||||||| ||||| ||||  || || ||||    
T  38845249 ctttcatgaaagactggattagctgatatatgtaaagcactttgattatcacaatacaatacagggactctagtgcaagtaatttgcaggtcctttaaaa 38845348  T
Q  369 gatacatcagccattgaagctcaca 393  Q
    |||| |  |||||||||||||||||    
T  38845349 gatataatagccattgaagctcaca 38845373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18484161 - 18484234
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactctaatagtaaagctaaaaacatgaaaagtaata 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18484161 tatgctaagtactgtgaactagcaactagagaattgctactctaatagtaaagctaaaaacatgaaaagtaata 18484234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 14236705 - 14236652
Alignment:
Q  271 ttcatggaacactggattagctgagatgtgaagagcactctggttatcacagta 324  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  14236705 ttcatgaaacactggattagctgatatgtgaagtgcactctggttatcacagta 14236652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 19873884 - 19873488
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactctaat-agtaaagctaaaaacatgaaaagtaatagtctccc-tcaagttggaggtttgt 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  19873884 tatgctaagtactgtgaactagcaactagagaattgctactctaaccagtaaagctaaaa-catgaaaagtaatagtcccccctcaagttggaggtttgt 19873786  T
Q  99 atatatcaactaaacccaacttgaacaacaaagaattgaaaagctgaggatgaagggacttagtnnnnnnntctgcaagttgatttttagaggaaatggg 198  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||       |||||||||||||||||||||||||||||    
T  19873785 atatatcaactaaacccaacttgaacaacaaagaagtgaaaggctgaggaagaagggacttagtaaaaaaatctgcaagttgatttttagaggaaatggg 19873686  T
Q  199 aagaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19873685 aagaagtttcatgattcctgctgcaagtttttctctgacaatgtgccagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatg 19873586  T
Q  299 tgaagagcactctggttatcacagtacaacacaggaattctagtgcatgtaatctgcaaatctttcaaaagatacatcagccattgaagctcacaggt 396  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19873585 tgaagagcactctggttatcacagtacaacataggaattctagtgcatgtaatctgcaaatctttcaaaagatacatcagccattgaagctcacaggt 19873488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21032129 - 21032201
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactctaatagtaaagctaaaaacatgaaaagtaata 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  21032129 tatgctaagtactgtgaactagcaactagagaattgctactctaacagtaaagct-aaaacatgaaaagtaata 21032201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 2998798 - 2998692
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtaca 326  Q
    |||||||||||||  ||||| || |||||||||||||||||||| ||||| ||||||||||| |  |  |||||||  ||||||||  |||||||||| |    
T  2998798 ttttctctgacaagatggcaatctatttccaaatgtttagttctctcatgaaacactggattggaagctatgtgaattgcactctgactatcacagtata 2998699  T
Q  327 acacagg 333  Q
    |||||||    
T  2998698 acacagg 2998692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 327
Target Start/End: Complemental strand, 44231432 - 44231278
Alignment:
Q  173 gcaagttgatttttagaggaaatgggaagaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagttcttt 272  Q
    |||||||| |||| ||||||||  || | ||| ||||||||||| |||  |||||| ||||| || |  |  |||||||| |||||||| || |||| ||    
T  44231432 gcaagttggttttgagaggaaacaggtaaaagcttcatgattccagcttgaagtttctctctaaccagataacagtcaatctccaaatgctttgttcgtt 44231333  T
Q  273 catggaacactggattagctgagatgtgaagagcactctggttatcacagtacaa 327  Q
    |||| || ||||||||||| |  || ||||| |||||||| ||||||||| ||||    
T  44231332 catgaaaaactggattagcagctatatgaagggcactctgattatcacagaacaa 44231278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 29218623 - 29218675
Alignment:
Q  224 agtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatg 276  Q
    ||||| ||||| | |||||||||  |||||| |||||||||||||||||||||    
T  29218623 agtttctctctaataatgtggcaaccaattttcaaatgtttagttctttcatg 29218675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 324
Target Start/End: Complemental strand, 35619963 - 35619863
Alignment:
Q  224 agtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagt 323  Q
    |||||||| || |||||||| || |||||||| |  || |||||||||||| ||||||| ||||| || |  ||||| |  ||||| |||||||||||||    
T  35619963 agtttttccctaacaatgtgacaatcaatttcaaggtgcttagttctttcacggaacacgggatttgcagcaatgtgtatggcactttggttatcacagt 35619864  T
Q  324 a 324  Q
    |    
T  35619863 a 35619863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 40 - 322
Target Start/End: Complemental strand, 28294679 - 28294398
Alignment:
Q  40 ctctaatagtaaagctaaaaacatgaaaagtaatagtctccctcaagttggaggtttgtatatatcaactaaacccaacttgaacaacaaagaattgaaa 139  Q
    |||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||    
T  28294679 ctctaatagtaaagctaaaa-cataaaatgtaatagtccccctcaagttggaggtttgtatatatcaactaaacccagcttgaacagcagagaattgaaa 28294581  T
Q  140 agctgaggatgaagggacttagtnnnnnnntctgcaagttgatttttagaggaaatgggaagaagtttcatgattcctgctgcaagtttttctctgacaa 239  Q
     |  ||| | ||||||||||| |       ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28294580 ggtcgagaaagaagggacttaataaaaaaatctgcaaattgattttgagaggaaatgggaagaagtttcatgattcctgctgcaattttttctctgacaa 28294481  T
Q  240 tgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacag 322  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28294480 tgtgacagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctgattatcacag 28294398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 40 - 322
Target Start/End: Original strand, 28517394 - 28517675
Alignment:
Q  40 ctctaatagtaaagctaaaaacatgaaaagtaatagtctccctcaagttggaggtttgtatatatcaactaaacccaacttgaacaacaaagaattgaaa 139  Q
    |||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||    
T  28517394 ctctaatagtaaagctaaaa-cataaaatgtaatagtccccctcaagttggaggtttgtatatatcaactaaacccagcttgaacagcagagaattgaaa 28517492  T
Q  140 agctgaggatgaagggacttagtnnnnnnntctgcaagttgatttttagaggaaatgggaagaagtttcatgattcctgctgcaagtttttctctgacaa 239  Q
     |  ||| | ||||||||||| |       ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28517493 ggtcgagaaagaagggacttaataaaaaaatctgcaaattgattttgagaggaaatgggaagaagtttcatgattcctgctgcaattttttctctgacaa 28517592  T
Q  240 tgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacag 322  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28517593 tgtgacagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctgattatcacag 28517675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 28294369 - 28294296
Alignment:
Q  323 tacaacacaggaattctagtgcatgtaatctgcaaatctttcaaaagatacatcagccattgaagctcacaggt 396  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| || || |||||||||||||||    
T  28294369 tacaacacaggaactctagtgcatataatctgcaaatctttcaaaagatacaacaacctttgaagctcacaggt 28294296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 323 - 396
Target Start/End: Original strand, 28517704 - 28517777
Alignment:
Q  323 tacaacacaggaattctagtgcatgtaatctgcaaatctttcaaaagatacatcagccattgaagctcacaggt 396  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| || || |||||||||||||||    
T  28517704 tacaacacaggaactctagtgcatataatctgcaaatctttcaaaagatacaacaacctttgaagctcacaggt 28517777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 393
Target Start/End: Complemental strand, 34826092 - 34825926
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtaca 326  Q
    |||||||||||||  ||||| || |||||||||||||||||||| ||||| || |||||||| |  |  |||||||  ||||||||  |||||||||| |    
T  34826092 ttttctctgacaagatggcaatctatttccaaatgtttagttctctcatgaaatactggattggaagctatgtgaattgcactctgactatcacagtata 34825993  T
Q  327 acacaggaattctagtgcatgtaatctgcaaatctttcaaaagatacatcagccattgaagctcaca 393  Q
    |||||||   |||  |||| ||||  || ||||||||||| ||||| | |||||| ||||| |||||    
T  34825992 acacaggttgtctgatgcaagtaacttgtaaatctttcaagagatatagcagccactgaagttcaca 34825926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 22845199 - 22845146
Alignment:
Q  271 ttcatggaacactggattagctgagatgtgaagagcactctggttatcacagta 324  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  22845199 ttcatgaaacactggattagctgatatgtgaagtgcactctggttatcacagta 22845146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28294748 - 28294705
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactcta 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  28294748 tatgctaagtactgtgaactagcaactagagaattgctactcta 28294705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28517325 - 28517368
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactcta 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  28517325 tatgctaagtactgtgaactagcaactagagaattgctactcta 28517368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28522175 - 28522218
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactcta 44  Q
    |||||||||||||||||||||| | |||||||||||||||||||    
T  28522175 tatgctaagtactgtgaactagaaactagagaattgctactcta 28522218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 393
Target Start/End: Complemental strand, 33461935 - 33461769
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtaca 326  Q
    |||||||||||||  || ||||| |||||||||||||||||||| ||||| |||||| |||| |  |  |||||||  ||||||||  ||||| | || |    
T  33461935 ttttctctgacaagatgacagtctatttccaaatgtttagttctctcatgaaacactagattggaagctatgtgaattgcactctgactatcagaatata 33461836  T
Q  327 acacaggaattctagtgcatgtaatctgcaaatctttcaaaagatacatcagccattgaagctcaca 393  Q
    |||||||   |||  |||| ||||  || ||||||||||| ||||| | |||||| ||||| |||||    
T  33461835 acacaggttgtctgatgcaagtaacttgtaaatctttcaagagatatagcagccactgaagttcaca 33461769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 335
Target Start/End: Complemental strand, 34069170 - 34069035
Alignment:
Q  200 agaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgt 299  Q
    ||||| ||||| |||||||||   ||||||||||| || | ||| |||||||| || |  || || ||||||||||| || ||||| |||||||  ||||    
T  34069170 agaagcttcattattcctgcttgtagtttttctctaaccaagtgacagtcaatctcaaggtgcttggttctttcatgaaagactgggttagctgcaatgt 34069071  T
Q  300 gaagagcactctggttatcacagtacaacacaggaa 335  Q
    | |  ||||||||||| |||||||| | ||||||||    
T  34069070 gtaaggcactctggttgtcacagtaaagcacaggaa 34069035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 6567608 - 6567662
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaaca 281  Q
    |||||||| ||||||||||| || || |||||||| |||||||||||||| ||||    
T  6567608 ttttctctaacaatgtggcaatctatctccaaatgcttagttctttcatgaaaca 6567662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 69 - 393
Target Start/End: Original strand, 47705128 - 47705452
Alignment:
Q  69 gtaatagtctccctcaagttggaggtttgtatatatcaactaaacccaacttgaacaacaaagaattgaaaagctgaggatgaagggacttagtnnnnnn 168  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| |||||||| |||| || || ||          
T  47705128 gtaatagtccccctcaagttggaggtttgtatatatcaactaaacccaacttgaacaataaagagctgaaaggctgaggaagaagagatttggtgaagaa 47705227  T
Q  169 ntctgcaagttgatttttagaggaaatgggaagaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagtt 268  Q
     ||||||||||||||||  |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||| || ||||| || ||||| || |||    
T  47705228 atctgcaagttgattttgtgaggaaatagggagaagcttcatgattcctgctgcaagcttttctctgacaatgtgacaatcaatctctaaatgcttggtt 47705327  T
Q  269 ctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtacaacacaggaattctagtgcatgtaatctgcaaatctttcaaaa 368  Q
    |||||||| || |||||||||||||| || || | |||||| || |||||||| ||||| ||||| | ||||||||| ||||| ||||  || || ||||    
T  47705328 ctttcatgaaagactggattagctgatatatgtaaagcactttgattatcacaatacaatacagggactctagtgcaagtaatttgcaggtcctttaaaa 47705427  T
Q  369 gatacatcagccattgaagctcaca 393  Q
    |||| |  |||||||||||||||||    
T  47705428 gatataatagccattgaagctcaca 47705452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14507096 - 14507139
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactcta 44  Q
    |||||||| ||||||||||||||| |||||||||||||||||||    
T  14507096 tatgctaaatactgtgaactagcaactagagaattgctactcta 14507139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 333
Target Start/End: Original strand, 23415494 - 23415582
Alignment:
Q  245 cagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtacaacacagg 333  Q
    ||||| || |||| |||||| || | |||||| ||||| ||||||||||| || || |  ||||||||||||||||||||||| |||||    
T  23415494 cagtctatgtccagatgttttgtgcgttcatgaaacacaggattagctgaaatatgcaatgcactctggttatcacagtacaaaacagg 23415582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 18008428 - 18008367
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggatt 288  Q
    |||||||||||||| || || || || |||||||  || |||||||||||||||||||||||    
T  18008428 ttttctctgacaatatgacaatctatctccaaattctttgttctttcatggaacactggatt 18008367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 52780046 - 52779949
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagta 324  Q
    ||||||||||| || ||||| ||||||||||||||||| || | |||||| || || |||||||| |  || || || ||||| || |||||||||||    
T  52780046 ttttctctgactatatggcaatcaatttccaaatgtttggtgcgttcatgaaagaccggattagcagctatatggagggcactttgattatcacagta 52779949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 69 - 356
Target Start/End: Original strand, 17477276 - 17477563
Alignment:
Q  69 gtaatagtctccctcaagttggaggtttgtatatatcaactaaacccaacttgaacaacaaagaattgaaaagctgaggatgaagggacttagtnnnnnn 168  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||||| | ||| |||||| | |||||| |||| || || ||          
T  17477276 gtaatagtccccctcaagttggaggtttgtatgtatcaacgaaatccaacttgaacaatagagagttgaaaggttgaggaagaagagattttgtaaaaaa 17477375  T
Q  169 ntctgcaagttgatttttagaggaaatgggaagaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagtt 268  Q
     ||||||||||||||||  |||||||| || ||||| ||||||||  ||||||||||||| ||||| ||||||||||| ||||||| || ||| || |||    
T  17477376 atctgcaagttgattttgtgaggaaatagggagaagcttcatgatgtctgctgcaagtttctctctaacaatgtggcaatcaattttcagatgcttggtt 17477475  T
Q  269 ctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtacaacacaggaattctagtgcatgtaatctgca 356  Q
    ||||||||||| |||||||| |||||||||| ||  | | | || |||||||||||||| ||||||| | || |||| ||||| ||||    
T  17477476 ctttcatggaaaactggattggctgagatgtaaacggaattttgattatcacagtacaaaacaggaactttattgcaagtaatttgca 17477563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 393
Target Start/End: Complemental strand, 37194372 - 37194206
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtaca 326  Q
    |||||||||||||  ||||| || ||||||||||| |||||||| ||||| || |||||||| |  |  |||||||  ||||||||  |||||||||| |    
T  37194372 ttttctctgacaagatggcaatctatttccaaatggttagttctctcatgaaatactggattggaagctatgtgaattgcactctgactatcacagtata 37194273  T
Q  327 acacaggaattctagtgcatgtaatctgcaaatctttcaaaagatacatcagccattgaagctcaca 393  Q
    |||||||   |||  |||| ||||  || ||||||||||| ||||| | |||||| ||||| |||||    
T  37194272 acacaggttgtctgatgcaagtaacttgtaaatctttcaagagatatagcagccactgaagttcaca 37194206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 335
Target Start/End: Complemental strand, 55312336 - 55312228
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtaca 326  Q
    ||||| |||||||| |||||||||||||| | |||||||||||||||||| || || ||||| | ||  ||||| | |||||| || |||||||| || |    
T  55312336 ttttccctgacaatatggcagtcaatttcaagatgtttagttctttcatgaaaaacaggatttgatgcaatgtgcatagcactttgattatcacaataaa 55312237  T
Q  327 acacaggaa 335  Q
     ||||||||    
T  55312236 gcacaggaa 55312228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 19584625 - 19584722
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagta 324  Q
    ||||||||||| || ||||| ||||||||||||||||| || | |||||| || || |||||||| |  || || || |||||||| |||||||||||    
T  19584625 ttttctctgactatatggcaatcaatttccaaatgtttggtgcgttcatgaaagaccggattagcagctatatggagggcactctgattatcacagta 19584722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 4676203 - 4676265
Alignment:
Q  271 ttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtacaacacagg 333  Q
    |||||| ||||| ||||||||||| || || |  ||||||||||||||||||||||| |||||    
T  4676203 ttcatgaaacacaggattagctgaaatatgcaatgcactctggttatcacagtacaaaacagg 4676265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 12298766 - 12298669
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagta 324  Q
    ||||||||||| || ||||| ||||||||||||||||| || | |||||| || || |||||||| |  || || || ||||| || |||||||||||    
T  12298766 ttttctctgactatatggcaatcaatttccaaatgtttggtgcgttcatgaaagaccggattagcagctatatggagggcactttgattatcacagta 12298669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 321
Target Start/End: Original strand, 44666370 - 44666518
Alignment:
Q  173 gcaagttgatttttagaggaaatgggaagaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagttcttt 272  Q
    |||||||||| || ||| ||||  || ||||||||||  || || |||  ||||||||||||||| |  ||||| |||||||||||||| ||||| | ||    
T  44666370 gcaagttgatcttgagaagaaacaggcagaagtttcaaaatgccagcttgaagtttttctctgactagatggcaatcaatttccaaatgcttagtacgtt 44666469  T
Q  273 catggaacactggattagctgagatgtgaagagcactctggttatcaca 321  Q
    |||| || |  |||||||| |  ||| | |||||||| || ||||||||    
T  44666470 catgaaaaataggattagcagcaatggggagagcactttgattatcaca 44666518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 19409930 - 19410114
Alignment:
Q  40 ctctaatagtaaagctaaaaacatgaaaagtaatagtctccctcaagttggaggtttgtatatatcaactaaacccaacttgaacaacaaagaattgaaa 139  Q
    |||| ||| ||||||||||| ||| ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||    
T  19409930 ctcttataataaagctaaaa-cataaaatgtaatagtccccctcaagttggagctttgtatatatcaactaaacccaacttgaacaacggagaattgaaa 19410028  T
Q  140 agctgaggatgaagggacttagtnnnnnnntctgcaagttgatttttagaggaaatgggaagaagtttcatgattcctgctgcaagt 226  Q
     |||||||| |||||||||| ||       |||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  19410029 ggctgaggaagaagggacttcgt-aaaaaatctgcaagttgattttgagaggaaatgggaagaagcttcatgattcctactgcaagt 19410114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 42133607 - 42133529
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactctaatagtaaagctaaaaacatgaaaagtaatagtctc 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42133607 tatgctaagtactgtgaactagcagctagagaattgctactctaatagtaaagctaaaaacatgaaaagtaatactctc 42133529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 26464704 - 26464801
Alignment:
Q  224 agtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcaca 321  Q
    |||||||| || || | ||| ||||||||||||| |||||| || |||||||| ||||||||||| ||||  ||||||||||||||||||||||||||    
T  26464704 agtttttccctaaccaagtgacagtcaatttccagatgttttgtcctttcatgaaacactggatttgctgcaatgtgaagagcactctggttatcaca 26464801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19409861 - 19409904
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactcta 44  Q
    |||||||||||| ||||||||| | |||||||||||||||||||    
T  19409861 tatgctaagtaccgtgaactagaaactagagaattgctactcta 19409904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 20238075 - 20238176
Alignment:
Q  226 tttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtac 325  Q
    |||||| || |||||||| |||||||| || || |||||||| | |||||| || || |||||||| |  ||||| | |||||| ||||| |||||||||    
T  20238075 tttttccctaacaatgtgacagtcaatatctaagtgtttagtccgttcatgaaatacaggattagcggcaatgtgtaaagcactatggttgtcacagtac 20238174  T
Q  326 aa 327  Q
    ||    
T  20238175 aa 20238176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1939 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 1193 - 1120
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactctaatagtaaagctaaaaacatgaaaagtaata 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1193 tatgctaagtactgtgaactagcagctagagaattgctactctaatagtaaagctaaaaacatgaaaagtaata 1120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3934 - 3861
Alignment:
Q  1 tatgctaagtactgtgaactagcagctagagaattgctactctaatagtaaagctaaaaacatgaaaagtaata 74  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||    
T  3934 tatgctaattactgtgaactagcaactagagaattgctactttaataggaaagctaaaaacatgaaaagtaata 3861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 29501710 - 29501631
Alignment:
Q  245 cagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagta 324  Q
    ||||||||||||||||| ||||| | ||||||||| | |||||| ||||  || |||||||||||||| |||||||||||    
T  29501710 cagtcaatttccaaatgcttagtgcgttcatggaaaattggattggctgctatatgaagagcactctgattatcacagta 29501631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 20970643 - 20970716
Alignment:
Q  248 tcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcaca 321  Q
    |||||||| || ||||| ||||| ||||||||||||||||| ||||  ||| | |||||||| |||||||||||    
T  20970643 tcaatttctaagtgttttgttctctcatggaacactggattggctgcaatgcgcagagcactatggttatcaca 20970716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 335
Target Start/End: Complemental strand, 13132960 - 13132852
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtaca 326  Q
    ||||| || |||||||| ||||||||||| | |||||||||||||||||| || || ||||| | ||  ||||| | |||||| || |||||||| || |    
T  13132960 ttttcccttacaatgtgacagtcaatttcaagatgtttagttctttcatgaaaaacaggatttgatgcaatgtgcatagcactttgattatcacaataaa 13132861  T
Q  327 acacaggaa 335  Q
     ||||||||    
T  13132860 gcacaggaa 13132852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 27474170 - 27474091
Alignment:
Q  245 cagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagta 324  Q
    |||||||| || || ||||| || | |||||| |||||| |||| ||||| || ||||||||||||| ||||||||||||    
T  27474170 cagtcaatgtctaagtgtttggtgcattcatgaaacactagatttgctgatatatgaagagcactctcgttatcacagta 27474091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 324
Target Start/End: Original strand, 34977779 - 34977880
Alignment:
Q  223 aagtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacag 322  Q
    ||||||||| || ||||||||||||||||| || | |||| | ||||| |||||||| ||||| || ||||  ||||| | || ||| ||||| ||||||    
T  34977779 aagtttttccctcacaatgtggcagtcaatctctagatgtatggttctctcatggaagactgggttggctgcaatgtgcatagaactttggttgtcacag 34977878  T
Q  323 ta 324  Q
    ||    
T  34977879 ta 34977880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 334
Target Start/End: Complemental strand, 22645729 - 22645621
Alignment:
Q  226 tttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtac 325  Q
    ||||||||| ||||| || |||||||| ||||||||||| ||||| |||||||| || || || || |  || ||||| ||||||||||||||||| ||     
T  22645729 tttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcagcaatatgaagggcactctggttatcacaatag 22645630  T
Q  326 aacacagga 334  Q
    | |||||||    
T  22645629 agcacagga 22645621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 321
Target Start/End: Complemental strand, 17131967 - 17131869
Alignment:
Q  223 aagtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcaca 321  Q
    ||||||||| || ||||| || ||||||||||| |  ||||| |||||||||||||||||| |||| ||||  ||||| | |||||| || ||||||||    
T  17131967 aagtttttccctcacaatatgacagtcaatttcaaggtgtttggttctttcatggaacactagatttgctgcaatgtgcatagcactttgattatcaca 17131869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 35089532 - 35089427
Alignment:
Q  230 tctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtacaaca 329  Q
    |||||||| ||||| || ||||| || | |||||| ||||| |||||||| || ||||| ||||  ||||| ||||||||||| |||||||| || || |    
T  35089532 tctctgactatgtgacaatcaatctcaagatgtttggttctctcatggaaaacaggattggctgctatgtggagagcactctgattatcacaatataaaa 35089433  T
Q  330 caggaa 335  Q
    ||||||    
T  35089432 caggaa 35089427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 2179 - 2091
Alignment:
Q  245 cagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtacaacacagg 333  Q
    ||||| || |||| |||||| || | |||||| ||||| ||||||||||| || || |  ||||||||||||||||||||||| |||||    
T  2179 cagtctatgtccagatgttttgtgcgttcatgaaacacaggattagctgaaatatgcaatgcactctggttatcacagtacaaaacagg 2091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 6532 - 6444
Alignment:
Q  245 cagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagtacaacacagg 333  Q
    ||||| || |||| |||||| || | |||||| ||||| ||||||||||| || || |  ||||||||||||||||||||||| |||||    
T  6532 cagtctatgtccagatgttttgtgcgttcatgaaacacaggattagctgaaatatgcaatgcactctggttatcacagtacaaaacagg 6444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 13375 - 13278
Alignment:
Q  227 ttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcacagta 324  Q
    ||||||||||| || ||||| ||||||||||||||||| || | |||||| || || |||||||| |  || || || ||||| || |||||||||||    
T  13375 ttttctctgactatatggcaatcaatttccaaatgtttggtgcgttcatgaaagaccggattagcagctatatggagggcactttgattatcacagta 13278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 168063 - 168148
Alignment:
Q  236 acaatgtggcagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcaca 321  Q
    ||||||||||| ||||||| |||||||||| | | |||||||||   ||||||||| |  |||||||| |||||||| || |||||    
T  168063 acaatgtggcaatcaattttcaaatgtttaatgcgttcatggaaagatggattagcagctatgtgaagtgcactctgattgtcaca 168148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 6957 - 6881
Alignment:
Q  200 agaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatg 276  Q
    |||||||||||||||||||||   |  ||||||||||| |  || ||||||||||||||||| || || ||||||||    
T  6957 agaagtttcatgattcctgcttgcatcttttctctgaccagatgacagtcaatttccaaatgctttgtcctttcatg 6881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 9052 - 8976
Alignment:
Q  200 agaagtttcatgattcctgctgcaagtttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatg 276  Q
    |||||||||||||||||||||   |  ||||||||||| |  || ||||||||||||||||| || || ||||||||    
T  9052 agaagtttcatgattcctgcttgcatcttttctctgaccagatgacagtcaatttccaaatgctttgtcctttcatg 8976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University