View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_high_12 (Length: 401)
Name: NF4658_high_12
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 27148452 - 27148084
Alignment:
| Q |
19 |
tattacttattaggcataaaaaagtttacgatttcaacccnnnnnnnnnnnngataaaaaggttttcaaatgtttttagtccctcttggaatatttttta |
118 |
Q |
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| T |
27148452 |
tattacttattaggcataaaaaagtttacgatttcaacc-aaaaaaaaaaaagataaaaaggttttcaaatgctttaagcccctcttggaatatttttta |
27148354 |
T |
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| Q |
119 |
tgaatttaagtttcataaacaatccgtgtaatatttttgaagtagttgccattaaagtcaaatacttttaatgatcttaggattgcaattgatcaacatc |
218 |
Q |
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| T |
27148353 |
tgaatttaagtttcataaacaatccgagtaatatttttgaagtagttgccattaaagtcaaatactttttatgatcttaggattgcaattgatcaacatc |
27148254 |
T |
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| Q |
219 |
aatacaaactcaatccaaagatgaatgttactagttttaataaaatattacgggttctccaatttttgatgttattacctgtgattgaaactgtaatt-n |
317 |
Q |
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| T |
27148253 |
aatacaaactcaatccaaagatgaatgttactagttttaataaaatattacgggttctccaatttttgttgttattacctgtgattgaaactgtaattaa |
27148154 |
T |
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| Q |
318 |
nnnnnnncaattatattgatgttgtatatgcaattaaatcattttttatttacccttgtgttgttcttct |
387 |
Q |
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| T |
27148153 |
aaaaaaacaattatattgatgttgtatatgcaattaaatcattttttatttacccttgtgttgttcttct |
27148084 |
T |
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