View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_high_20 (Length: 261)
Name: NF4658_high_20
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 3427565 - 3427824
Alignment:
| Q |
6 |
agaccttgaagatgagcacactcccagattgaatcatc-----gtttattacatccttactgattttaacacaaggattttttgttcattacatccttac |
100 |
Q |
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| T |
3427565 |
agaccttgaggaggagcacactcccagattgaatcatcttcgtgtttattacatccttactgattttaacacaaggattttttgttcattacatccttac |
3427664 |
T |
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| Q |
101 |
tcgttttaacacacgtttcaatgaacatagttgattacaacccttcttccttgaggttgaatcatttaagggtagtgaaaacctttgcttccaaaccttc |
200 |
Q |
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| T |
3427665 |
tggttttaacacacgtttcaatgaacatagttgattacaacccttcttccttaaggttgaatcatttaa-ggtagtgaaaacctttgcttccaaatcttc |
3427763 |
T |
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| Q |
201 |
taccactcttttaattatcctccaccacagtgcataattatgctatatataccactaaatc |
261 |
Q |
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| T |
3427764 |
taccactcttttaattatcctccaccacagtgcataattatgctatatataaccctaaatc |
3427824 |
T |
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