View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_high_27 (Length: 239)
Name: NF4658_high_27
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4143661 - 4143882
Alignment:
| Q |
1 |
ttgccggcacatgttgaattcttcaacctacaaacaaacacaaaatcaacttcaattaaacatacattgttacacgcaattgaagtaatgagctgaaaca |
100 |
Q |
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| T |
4143661 |
ttgccggcacatgttgaattcttcaacctacaaacaaacacaaaatcaacttcaattaaacatacattgttacacgcaattgaagtaatgagctgaaaca |
4143760 |
T |
|
| Q |
101 |
caattaggttaaacgaatattgcacagctgaaaacaaagaaattcatgagagaggaagacttacagagaagagagaaaatgcgaagaagttcttggtcga |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4143761 |
caattaggttaaacgaatattg--cagctgaaaacaaagaaattcatgagagaggaagacttacagagaagagagaaaatgcgaagaagttcttggtcga |
4143858 |
T |
|
| Q |
201 |
tctggcggagaagggaagagcatg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
4143859 |
tctggcggagaagggaagagcatg |
4143882 |
T |
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