View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_high_28 (Length: 238)
Name: NF4658_high_28
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35865959 - 35866181
Alignment:
| Q |
1 |
tatatttgtctatggtaaggtaaccaagtaaattatgatcaacacaattaaacatttgatcatcatcaaataaacccgtttctttgatagcaataactag |
100 |
Q |
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| T |
35865959 |
tatatttgtctatggtaaggtaaccaagtaaattatgatcaacacaattaaacatttgatcatcatcaaataatcccgtttctttgatagcaataactag |
35866058 |
T |
|
| Q |
101 |
attataaattggttacggtttctatataggaacagcttccattcatagattattagtgatataaatttctcggtgcaacatgcgcaacatgattaatcga |
200 |
Q |
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| T |
35866059 |
attataaattggttacggtttctatataggaacagcttccattcatagattattagtgatataaatttcttggtgcaacatgcgcaacatgattaatcga |
35866158 |
T |
|
| Q |
201 |
aaaccttggtttgtttaaatgtt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
35866159 |
aaaccttggtttgtttaaatgtt |
35866181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 34815721 - 34815924
Alignment:
| Q |
4 |
atttgtctatggtaaggtaaccaagtaaattatgatcaacacaattaaacatttgatcatcatcaaataaacccgtttctttgatagca----ataacta |
99 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||||||||| || |||| |
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| T |
34815721 |
atttgtctatggtaaggcaactaagtaaattatgatcaacacaattaaaaatttgatcatcctgaaataaacttgtttctttgatagcaaggcatcacta |
34815820 |
T |
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| Q |
100 |
gattataaattggttacggtttctatataggaacagcttccattcatagattattagtgatataaatttctcggtgcaacatgcgcaacatgattaatcg |
199 |
Q |
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||||||||||| |||||||||||||||| | | | |||||||| ||||| | ||||| ||||||||||| | ||| ||| || ||||||||||||| | |
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| T |
34815821 |
aattataaattgattacggtttctatataagcaaaacttccattagtagatcactagtggtataaatttcttgatgccacaggctcaacatgattaattg |
34815920 |
T |
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| Q |
200 |
aaaa |
203 |
Q |
| |
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|||| |
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| T |
34815921 |
aaaa |
34815924 |
T |
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Back To:
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