View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_high_6 (Length: 497)
Name: NF4658_high_6
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Complemental strand, 38927478 - 38927010
Alignment:
| Q |
11 |
cagagaaaccggacgaggaaagatgaaactgcatagatcaaatgagagaaacaaggagacggaattgattgataaaatggaattagatactaacatagta |
110 |
Q |
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| T |
38927478 |
cagagaaaccggacgaggaaagatgaaactgcatagatcaaatgagagaaacaaggagacggaattgattgataaaatggaattagatactaacatagta |
38927379 |
T |
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| Q |
111 |
gttaaatgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgttgcatcacaaacaaaaatccatttga |
210 |
Q |
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| T |
38927378 |
gttaaatgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgttgcatcacaaacaaaaatccatttga |
38927279 |
T |
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| Q |
211 |
ttcatcttaatattggatgtggagtgatgagtacatgtttcatgcaagcattagtggaccgcaaggaaaagccggttgaaattctgaagatcacagctat |
310 |
Q |
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| T |
38927278 |
ttcatcttaatattggatgtggagtgatgagtacatgtttcatgcaagcattagtagaccgcaaggaaaagccggttgaaattctgaagatcacagctat |
38927179 |
T |
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| Q |
311 |
tggattttctaacaaggctaagttagaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataacatagtttttgtt |
410 |
Q |
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| T |
38927178 |
tggattttctaacaaggctaagttagaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataacatagtttttgtt |
38927079 |
T |
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| Q |
411 |
gaggatgctatggagattaagttagatcaatttgacattgaatatgatgaagctgttgctatttactct |
479 |
Q |
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| T |
38927078 |
gaggatgctatggagattaagttagatcaatttgacattgaatatgatgaagctgttgctatttactct |
38927010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 44837896 - 44837828
Alignment:
| Q |
117 |
tgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgtt |
185 |
Q |
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| T |
44837896 |
tgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttgaacatgtt |
44837828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 44837674 - 44837613
Alignment:
| Q |
336 |
gaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataa |
397 |
Q |
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| T |
44837674 |
gaagaaactggcaaaaatttagctagttttgctgaatcattgaacttgccctttttatataa |
44837613 |
T |
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