View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_high_7 (Length: 484)
Name: NF4658_high_7
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 466
Target Start/End: Complemental strand, 2833520 - 2833075
Alignment:
| Q |
13 |
tgagatgaataggattaaagctgtttttaagcttcaattcaatgctactaaggtaggttcatctcagaatttttgtatattcattttctttactttcata |
112 |
Q |
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| T |
2833520 |
tgagaagaataggattaaagctgtttttaagcttcaattcaatgctactaaggtaggttcatctcagaatttttgtatattcattttctttactttcata |
2833421 |
T |
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| Q |
113 |
tttctcagaatgaataatctaatgtattggttctgttaggttctgagggttttgataatcttttatgatcaaatttgatctgattaaatt--aagacagt |
210 |
Q |
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| T |
2833420 |
tttctcagaatgaataatctaatgtattggttctgttaggttctgagggttttgataatcttttatgatcaaatttgatctgattaaattaaaaaacagt |
2833321 |
T |
|
| Q |
211 |
tgtaaataagtcattagtgctacctttattaataatagnnnnnnnnctcctagatttcaattataatataaagtgaaaaaagtaacatttcttaacctat |
310 |
Q |
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| T |
2833320 |
tgtaaataagtcattagtgctacctttattaataatagttttttttctcctagatttcaattataatataaagtgaaaaaagtaacatttcttaacctat |
2833221 |
T |
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| Q |
311 |
catatttcaattttctgggaaatgaaaatggattttgttaatagtgtgaattatgatgatcannnnnnnnnnnnnattcttaaccgtattaggttggaaa |
410 |
Q |
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| T |
2833220 |
cata-------tttctgggaaatgaaaatggattttg-taatagtgtgaattatgatgatca--tatttttttttattcttaaccgtattaggttggaaa |
2833131 |
T |
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| Q |
411 |
ttattaaattaacataacatgattggatgagaaattgtgtttggtgatgtaacttc |
466 |
Q |
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| T |
2833130 |
ttattaaattaacataacatgattggatgagaaattgtgtttggtgatgtaacttc |
2833075 |
T |
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