View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4658_low_10 (Length: 421)

Name: NF4658_low_10
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4658_low_10
NF4658_low_10
[»] chr4 (36 HSPs)
chr4 (93-363)||(47282350-47282618)
chr4 (25-95)||(45747794-45747864)
chr4 (25-101)||(48518883-48518959)
chr4 (25-99)||(41859041-41859115)
chr4 (25-94)||(40435907-40435976)
chr4 (25-94)||(48879332-48879401)
chr4 (25-97)||(27555417-27555489)
chr4 (25-93)||(27762899-27762967)
chr4 (25-97)||(39730289-39730361)
chr4 (25-99)||(43723271-43723345)
chr4 (25-94)||(6279920-6279989)
chr4 (25-94)||(23686794-23686863)
chr4 (25-98)||(25932448-25932521)
chr4 (25-94)||(35999693-35999762)
chr4 (34-95)||(55967998-55968059)
chr4 (34-94)||(25916034-25916094)
chr4 (25-93)||(34049597-34049665)
chr4 (25-96)||(18405231-18405302)
chr4 (25-96)||(42773955-42774026)
chr4 (34-96)||(39498841-39498903)
chr4 (34-96)||(39502180-39502242)
chr4 (25-94)||(39835306-39835375)
chr4 (25-93)||(13229989-13230057)
chr4 (25-89)||(27942750-27942814)
chr4 (25-97)||(45596275-45596347)
chr4 (25-96)||(936133-936204)
chr4 (25-96)||(18931760-18931831)
chr4 (26-93)||(32953531-32953598)
chr4 (34-89)||(34237424-34237479)
chr4 (25-92)||(47670369-47670436)
chr4 (25-91)||(41744222-41744288)
chr4 (38-94)||(30415922-30415978)
chr4 (25-81)||(8322252-8322308)
chr4 (25-94)||(50672907-50672973)
chr4 (25-88)||(10400810-10400873)
chr4 (47-97)||(26165393-26165443)
[»] scaffold0006 (2 HSPs)
scaffold0006 (25-98)||(201928-202001)
scaffold0006 (42-87)||(143633-143678)
[»] chr7 (38 HSPs)
chr7 (25-98)||(33378845-33378918)
chr7 (25-96)||(48314125-48314196)
chr7 (34-99)||(9814212-9814277)
chr7 (25-96)||(11329996-11330067)
chr7 (25-96)||(27248296-27248367)
chr7 (25-95)||(45045629-45045699)
chr7 (25-95)||(48160589-48160659)
chr7 (25-94)||(8419588-8419657)
chr7 (25-94)||(27213854-27213923)
chr7 (25-94)||(39554186-39554255)
chr7 (25-90)||(48341365-48341430)
chr7 (25-93)||(38544197-38544265)
chr7 (25-93)||(40212892-40212960)
chr7 (25-96)||(9946987-9947058)
chr7 (25-92)||(43949248-43949315)
chr7 (25-95)||(35488187-35488257)
chr7 (25-94)||(25924636-25924705)
chr7 (25-94)||(27419223-27419292)
chr7 (25-92)||(45265049-45265116)
chr7 (25-98)||(41632359-41632432)
chr7 (25-97)||(16825350-16825422)
chr7 (25-89)||(38396370-38396434)
chr7 (25-93)||(44566048-44566116)
chr7 (25-96)||(28904183-28904254)
chr7 (26-97)||(45723211-45723282)
chr7 (29-94)||(25098076-25098141)
chr7 (25-92)||(34930466-34930534)
chr7 (35-89)||(45448955-45449009)
chr7 (31-91)||(44820263-44820323)
chr7 (43-96)||(11000724-11000777)
chr7 (42-95)||(41684020-41684073)
chr7 (25-97)||(25045614-25045685)
chr7 (47-93)||(45440933-45440979)
chr7 (42-94)||(18824166-18824218)
chr7 (27-94)||(31921747-31921813)
chr7 (25-91)||(6656226-6656292)
chr7 (47-92)||(30685993-30686038)
chr7 (47-91)||(37534105-37534149)
[»] chr3 (28 HSPs)
chr3 (25-97)||(40908268-40908340)
chr3 (25-99)||(11239114-11239188)
chr3 (25-94)||(24574578-24574647)
chr3 (25-94)||(26849025-26849094)
chr3 (25-95)||(44952311-44952381)
chr3 (25-93)||(6231501-6231569)
chr3 (25-93)||(28124436-28124504)
chr3 (34-93)||(9320448-9320507)
chr3 (25-96)||(20297796-20297867)
chr3 (28-94)||(8476307-8476373)
chr3 (25-89)||(33217917-33217981)
chr3 (25-93)||(47114857-47114925)
chr3 (25-94)||(20414464-20414533)
chr3 (25-98)||(48339752-48339825)
chr3 (25-96)||(31435920-31435991)
chr3 (34-97)||(43715304-43715367)
chr3 (25-91)||(1099201-1099267)
chr3 (25-96)||(43132154-43132225)
chr3 (25-74)||(31611004-31611053)
chr3 (42-94)||(45826796-45826848)
chr3 (38-95)||(55435390-55435447)
chr3 (25-85)||(53165733-53165793)
chr3 (47-94)||(29512704-29512751)
chr3 (34-68)||(9320405-9320439)
chr3 (47-96)||(6831954-6832003)
chr3 (25-78)||(10822733-10822786)
chr3 (25-93)||(12228256-12228324)
chr3 (42-94)||(28770209-28770261)
[»] chr1 (38 HSPs)
chr1 (25-96)||(2430500-2430571)
chr1 (25-100)||(3572558-3572633)
chr1 (25-97)||(1597338-1597410)
chr1 (25-96)||(6978774-6978845)
chr1 (25-95)||(9115841-9115911)
chr1 (25-94)||(2632856-2632925)
chr1 (25-90)||(36361786-36361851)
chr1 (25-94)||(46666712-46666781)
chr1 (25-93)||(39930461-39930529)
chr1 (25-97)||(52630777-52630849)
chr1 (25-96)||(8332018-8332089)
chr1 (25-92)||(25789767-25789834)
chr1 (25-96)||(39329612-39329683)
chr1 (28-94)||(5806290-5806356)
chr1 (25-94)||(6911497-6911566)
chr1 (25-94)||(47037461-47037530)
chr1 (25-94)||(49822916-49822985)
chr1 (25-93)||(20260086-20260154)
chr1 (25-91)||(9831872-9831938)
chr1 (25-94)||(12190176-12190245)
chr1 (25-94)||(38964678-38964747)
chr1 (25-93)||(14788727-14788795)
chr1 (34-94)||(35187469-35187529)
chr1 (25-91)||(32824926-32824992)
chr1 (25-94)||(4683373-4683442)
chr1 (25-94)||(5518503-5518572)
chr1 (25-90)||(51445083-51445148)
chr1 (34-94)||(32202330-32202390)
chr1 (25-94)||(48916021-48916090)
chr1 (38-93)||(1007764-1007819)
chr1 (27-91)||(50190767-50190831)
chr1 (38-97)||(52699462-52699521)
chr1 (43-94)||(29091688-29091739)
chr1 (25-84)||(37436630-37436689)
chr1 (42-90)||(31806759-31806807)
chr1 (25-87)||(30241013-30241075)
chr1 (42-87)||(13653872-13653917)
chr1 (42-86)||(11014448-11014492)
[»] chr5 (20 HSPs)
chr5 (25-95)||(19065503-19065573)
chr5 (25-94)||(4765559-4765628)
chr5 (25-94)||(12970529-12970598)
chr5 (25-96)||(22935909-22935980)
chr5 (25-96)||(28602558-28602629)
chr5 (25-94)||(555705-555774)
chr5 (25-94)||(14206820-14206889)
chr5 (25-94)||(18412212-18412281)
chr5 (25-90)||(11855658-11855723)
chr5 (25-94)||(29543014-29543083)
chr5 (25-89)||(6091718-6091782)
chr5 (25-93)||(36703877-36703945)
chr5 (25-94)||(27481360-27481429)
chr5 (34-91)||(32535949-32536006)
chr5 (26-87)||(8406898-8406959)
chr5 (42-98)||(42012174-42012230)
chr5 (25-72)||(8646412-8646459)
chr5 (42-92)||(6930664-6930714)
chr5 (38-91)||(20962606-20962659)
chr5 (42-91)||(26637045-26637094)
[»] chr8 (27 HSPs)
chr8 (25-98)||(25837914-25837987)
chr8 (25-97)||(12710648-12710720)
chr8 (25-93)||(18726619-18726687)
chr8 (25-96)||(35818421-35818492)
chr8 (25-96)||(37392543-37392614)
chr8 (25-96)||(38364084-38364155)
chr8 (25-94)||(1554353-1554422)
chr8 (25-98)||(16313502-16313575)
chr8 (25-94)||(32660932-32661001)
chr8 (25-87)||(3050012-3050074)
chr8 (25-90)||(26601941-26602006)
chr8 (25-93)||(10896217-10896285)
chr8 (27-95)||(41228712-41228780)
chr8 (25-96)||(38132734-38132805)
chr8 (25-92)||(42755870-42755937)
chr8 (25-94)||(26062147-26062216)
chr8 (25-93)||(18298115-18298183)
chr8 (34-89)||(7931251-7931306)
chr8 (34-93)||(40197076-40197135)
chr8 (40-104)||(5020479-5020543)
chr8 (25-94)||(7317376-7317445)
chr8 (43-92)||(33444627-33444676)
chr8 (52-91)||(8635664-8635703)
chr8 (25-91)||(21137134-21137200)
chr8 (45-96)||(35394413-35394464)
chr8 (47-92)||(25899657-25899702)
chr8 (38-86)||(41432756-41432804)
[»] chr6 (12 HSPs)
chr6 (25-94)||(7053569-7053638)
chr6 (25-94)||(2657703-2657772)
chr6 (25-94)||(8029336-8029405)
chr6 (25-93)||(1317021-1317089)
chr6 (25-96)||(14171016-14171087)
chr6 (25-90)||(18897924-18897989)
chr6 (26-99)||(7344077-7344150)
chr6 (25-86)||(16968928-16968989)
chr6 (25-98)||(6705760-6705833)
chr6 (57-93)||(10246222-10246258)
chr6 (42-94)||(3869525-3869577)
chr6 (42-92)||(10849784-10849834)
[»] chr2 (38 HSPs)
chr2 (25-94)||(346344-346413)
chr2 (25-94)||(39995130-39995199)
chr2 (25-98)||(42674656-42674729)
chr2 (25-96)||(21737397-21737468)
chr2 (25-94)||(6171794-6171863)
chr2 (25-94)||(11071608-11071677)
chr2 (25-93)||(9733846-9733914)
chr2 (25-97)||(34356696-34356768)
chr2 (25-94)||(5770109-5770178)
chr2 (25-94)||(14777497-14777566)
chr2 (25-94)||(37533955-37534024)
chr2 (25-97)||(4559562-4559634)
chr2 (25-91)||(2050869-2050935)
chr2 (25-99)||(17965986-17966060)
chr2 (25-95)||(20426481-20426551)
chr2 (25-91)||(37192525-37192591)
chr2 (25-95)||(41729128-41729198)
chr2 (25-94)||(2521678-2521747)
chr2 (25-89)||(28311701-28311765)
chr2 (25-96)||(40950856-40950927)
chr2 (25-92)||(41750532-41750599)
chr2 (25-94)||(45409253-45409322)
chr2 (25-89)||(638596-638660)
chr2 (25-89)||(37233432-37233496)
chr2 (34-88)||(26310281-26310335)
chr2 (25-94)||(27357962-27358031)
chr2 (25-94)||(6571690-6571759)
chr2 (25-90)||(13760948-13761013)
chr2 (25-89)||(14832813-14832877)
chr2 (47-94)||(40570045-40570092)
chr2 (25-98)||(1988314-1988387)
chr2 (38-96)||(45694204-45694262)
chr2 (31-96)||(7007582-7007647)
chr2 (25-90)||(18713660-18713725)
chr2 (43-94)||(14403232-14403283)
chr2 (47-94)||(25455049-25455096)
chr2 (25-78)||(14253525-14253578)
chr2 (42-91)||(24499460-24499509)
[»] scaffold0189 (1 HSPs)
scaffold0189 (25-88)||(28957-29020)
[»] scaffold0702 (1 HSPs)
scaffold0702 (25-96)||(3562-3633)
[»] scaffold0662 (1 HSPs)
scaffold0662 (25-96)||(4471-4542)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 93 - 363
Target Start/End: Complemental strand, 47282618 - 47282350
Alignment:
Q  93 ctaagtgacgttgagggtgcaacttgaccgtcaggagctaccatgcaagtcttttgtannnnnnnnnatgtcacctaaatggacattagtgtaagtcgaa 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  47282618 ctaagtgacgttgagggtgcaacttgaccgtcaggagctaccatgcaagtcttttgtattttttc--atgtcacctaaatggacattagtgtaagtcgaa 47282521  T
Q  193 ccaatctatgcgggtatgagattacgcgtcttcacaagagcataaatcatgttccttacagtgttaggcgtagagctaccaatgagtcggagttgtttca 292  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47282520 ccaatctatgcgggtatgagattatgcgtcttcacaagagcataaatcatgttccttacagtgttaggcgtagagctaccaatgagtcggagttgtttca 47282421  T
Q  293 tatgttgattacatcaagtgttgtaatgtgagaaatcaatgtgtatatgtggggaaattacaaggggaaat 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47282420 tatgttgattacatcaagtgttgtaatgtgagaaatcaatgtgtatatatggggaaattacaaggggaaat 47282350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 45747864 - 45747794
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45747864 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 45747794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 48518959 - 48518883
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtgac 101  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  48518959 cataggcatatacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacacccaaagtgac 48518883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 41859115 - 41859041
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtg 99  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41859115 cataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaagtg 41859041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 40435907 - 40435976
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40435907 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 40435976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 48879332 - 48879401
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48879332 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 48879401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 27555417 - 27555489
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27555417 catagacatatacattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaag 27555489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 27762967 - 27762899
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27762967 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 27762899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 39730361 - 39730289
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39730361 catagacatatacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccctaag 39730289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 43723271 - 43723345
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtg 99  Q
    |||||||| ||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  43723271 cataggcatatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctaagtg 43723345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 6279989 - 6279920
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6279989 catagacatatacattcatatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 6279920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 23686794 - 23686863
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23686794 cataggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 23686863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 25932448 - 25932521
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    |||||||| ||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  25932448 cataggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacaccctaagt 25932521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 35999693 - 35999762
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35999693 cataggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 35999762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 55968059 - 55967998
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55968059 atacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 55967998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 25916094 - 25916034
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25916094 atacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccct 25916034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 34049665 - 34049597
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34049665 catagacatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccc 34049597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 18405302 - 18405231
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18405302 cataggcatatacatttctataattttattctcgggaatcaacaattataacttgaaacaaacacaccctaa 18405231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 42773955 - 42774026
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  42773955 cataggcatatacattccaatcattttattcccagaaatcaacaattataacttgaaacaaacacaccctaa 42774026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 39498841 - 39498903
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39498841 atacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 39498903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 39502180 - 39502242
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39502180 atacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 39502242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 39835375 - 39835306
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||| ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39835375 catatgcatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39835306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 13230057 - 13229989
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  13230057 cataggcatatacatttctatcattttattcccgggaataaaaaattataacttgaaacaaacacaccc 13229989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 27942750 - 27942814
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27942750 catagacatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacac 27942814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 45596275 - 45596347
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    |||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  45596275 cataggcatatacatttctatcattttattcccgaaaatcaacaattataacttgaaacaaacgcaccctaag 45596347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 936133 - 936204
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||| | ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  936133 catagggatatatattccaatcattttattctcgggaatcaacaattataacttgaaacaaacacaccctaa 936204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 18931760 - 18931831
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    ||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  18931760 catagacatatacattcctatcattttattcccagaaatcaacaattataacttgaaacaaacacactctaa 18931831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 32953531 - 32953598
Alignment:
Q  26 ataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    ||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  32953531 ataggcatatacattcctatcattttgttcctgggaatcaacaattataacttgagacaaacacaccc 32953598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 34237479 - 34237424
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34237479 atacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacac 34237424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 47670369 - 47670436
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    |||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  47670369 cataggcatatacatttctatcattttatttccaggaatcaacaattataacttgaaacaaacacacc 47670436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 41744288 - 41744222
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  41744288 cataggcatatacatttctatcattttattcccggaaatcaacaattataacttgaaataaacacac 41744222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 30415922 - 30415978
Alignment:
Q  38 attcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  30415922 attcctatcattttattatcgggaatcaacaaatataacttgaaacaaacacaccct 30415978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 8322252 - 8322308
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaa 81  Q
    ||||| || ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  8322252 catagacatatacatttctatcattttattcccaggaatcaacaattataacttgaa 8322308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 50672973 - 50672907
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||| || |||||||||||||||||||||||| ||||||||||||  |||||| |||||||||||||||    
T  50672973 catagacatatacattcctatcattttattccc-ggaatcaacaat--taacttaaaacaaacacaccct 50672907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 10400873 - 10400810
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaaca 88  Q
    ||||| || ||||||| ||||||||||||||||   ||||||||| ||||||||||||||||||    
T  10400873 catagacatatacatttctatcattttattcccaaaaatcaacaaatataacttgaaacaaaca 10400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 26165393 - 26165443
Alignment:
Q  47 attttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    ||||||||| | |||||| |||| |||||| ||||||||||||||||||||    
T  26165393 attttattctcaggaatctacaaatataacatgaaacaaacacaccctaag 26165443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 201928 - 202001
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  201928 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 202001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 143633 - 143678
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaac 87  Q
    |||||||||||||| | ||||||||||| | |||||||||||||||    
T  143633 ctatcattttattctcaggaatcaacaaatttaacttgaaacaaac 143678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 33378845 - 33378918
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33378845 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 33378918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 48314125 - 48314196
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48314125 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 48314196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 9814277 - 9814212
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9814277 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtg 9814212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 11329996 - 11330067
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11329996 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 11330067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 27248296 - 27248367
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27248296 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 27248367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 45045629 - 45045699
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45045629 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttaaaacaaacacacccta 45045699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 48160659 - 48160589
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48160659 catagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 48160589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 8419657 - 8419588
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8419657 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8419588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 27213923 - 27213854
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27213923 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 27213854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 39554186 - 39554255
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39554186 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39554255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 48341365 - 48341430
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 90  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48341365 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 48341430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 38544197 - 38544265
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38544197 cataggcatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccc 38544265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 40212892 - 40212960
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40212892 cataggcatatacattcctatcattttattcccgcgaatcaacaattataacttgaaacaaacacaccc 40212960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 9947058 - 9946987
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  9947058 cataggcatatacattcctatcattttattcccgggaatcaaaaattataactttaaacaaacacaccctaa 9946987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 43949248 - 43949315
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43949248 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 43949315  T

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Target: chr7; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 35488257 - 35488187
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35488257 cataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacacccta 35488187  T

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Target: chr7; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 25924705 - 25924636
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25924705 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacataccct 25924636  T

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Target: chr7; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 27419292 - 27419223
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27419292 cataggcatatacatttctatcattttattcccgggaatcagcaattataacttgaaacaaacacaccct 27419223  T

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Target: chr7; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 45265116 - 45265049
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45265116 cataggcatatacattccaatcattttattcccgagaatcaacaattataacttgaaacaaacacacc 45265049  T

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Target: chr7; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 41632432 - 41632359
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    |||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| |||||    
T  41632432 cataggcatatacatttctatcattttattctcaggaatcaacaattataacttgaaacaaacacaccttaagt 41632359  T

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Target: chr7; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 16825422 - 16825350
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    |||||||| ||||||| |||||||||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  16825422 cataggcatatacatttctatcattttattcctaggaattaacaattataacttgaaacaaacacaccctaag 16825350  T

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Target: chr7; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 38396434 - 38396370
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38396434 catagacatatacattcctatcattttattcccgggaatcaacaattataacttggaacaaacac 38396370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 44566048 - 44566116
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    ||||| || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  44566048 catagacatatacattcctatcattttatttccggaaatcaacaattataacttgaaacaaacacaccc 44566116  T

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Target: chr7; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 28904254 - 28904183
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    ||||| || ||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  28904254 catagacatatacatttctatcattttattctcgggaatcaacaattataacttaaaacaaacacaccctaa 28904183  T

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Target: chr7; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 45723211 - 45723282
Alignment:
Q  26 ataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||    
T  45723211 ataggcatatatattcctatcattttattctcgggaatcaacaaatataacttgaaacaaacacaccgtaag 45723282  T

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Target: chr7; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 25098076 - 25098141
Alignment:
Q  29 ggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||| |||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  25098076 ggcatatacattcctatcattttattcccgaaaatcaaaaattataacttgaaacaaacacaccct 25098141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 34930534 - 34930466
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataac-ttgaaacaaacacacc 92  Q
    |||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  34930534 cataggcatatacatttctatcattttattcccaggaatcaacaattataactttgaaacaaacacacc 34930466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 45448955 - 45449009
Alignment:
Q  35 tacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  45448955 tacattcctatcattttattcccgagaatcaaaaattataacttgaaacaaacac 45449009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 44820263 - 44820323
Alignment:
Q  31 caaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    |||||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  44820263 caaatacatttctatcattttattcctgaaaatcaacaattataacttgaaacaaacacac 44820323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 11000724 - 11000777
Alignment:
Q  43 tatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||||||| || ||||||||||  ||||||||||||||||||||||||||    
T  11000724 tatcattttatttccaggaatcaacatatataacttgaaacaaacacaccctaa 11000777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 41684073 - 41684020
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    ||||||| |||||| | ||||||||||| |||||||||||||||||||||||||    
T  41684073 ctatcatattattctcaggaatcaacaaatataacttgaaacaaacacacccta 41684020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 25045685 - 25045614
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    |||| ||| ||| ||||||||| |||||| ||| | ||||||||| |||||||||||||||||||||||||||    
T  25045685 catatgcatatatattcctatctttttatccccag-aatcaacaaatataacttgaaacaaacacaccctaag 25045614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 45440933 - 45440979
Alignment:
Q  47 attttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||||||  ||||| ||||||||||||||||||||||||||||    
T  45440933 attttattcccaagaatctacaattataacttgaaacaaacacaccc 45440979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 18824166 - 18824218
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||||||||||||||   ||||||||| || |||||||||||||||||||||    
T  18824166 ctatcattttattcccaaaaatcaacaaatacaacttgaaacaaacacaccct 18824218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 31921813 - 31921747
Alignment:
Q  27 taggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||| ||| ||| ||||||||||||| |||  ||| ||||| ||||||||||||||||||||||||    
T  31921813 taggcatatatatttctatcattttatttccga-aatgaacaaatataacttgaaacaaacacaccct 31921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 6656292 - 6656226
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    |||||| | ||| |||| |||||||||||| ||   ||||||||| |||||||||||||||||||||    
T  6656292 cataggtatatatattcatatcattttatttccaaaaatcaacaaatataacttgaaacaaacacac 6656226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 30686038 - 30685993
Alignment:
Q  47 attttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    ||||||||||   ||||| |||||||||||||||||||||||||||    
T  30686038 attttattccaacgaatctacaattataacttgaaacaaacacacc 30685993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 37534149 - 37534105
Alignment:
Q  47 attttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    |||||||| || |||||| ||||||||||| ||||||||||||||    
T  37534149 attttatttccaggaatctacaattataacatgaaacaaacacac 37534105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 40908268 - 40908340
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40908268 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 40908340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 11239188 - 11239114
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtg 99  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11239188 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtg 11239114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 24574578 - 24574647
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24574578 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 24574647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 26849025 - 26849094
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26849025 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 26849094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 44952311 - 44952381
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44952311 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 44952381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 6231569 - 6231501
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6231569 cataggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccc 6231501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 28124504 - 28124436
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28124504 cataggcatatacattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccc 28124436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 9320507 - 9320448
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9320507 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 9320448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 20297796 - 20297867
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20297796 cataggcatatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 20297867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 8476373 - 8476307
Alignment:
Q  28 aggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8476373 aggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8476307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 33217981 - 33217917
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33217981 cataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacac 33217917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 47114925 - 47114857
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47114925 cataggcatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccc 47114857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 20414533 - 20414464
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  20414533 cataggcatatacattccaatcattttattcccagaaatcaacaattataacttgaaacaaacacaccct 20414464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 48339825 - 48339752
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    |||||||| |||||||  ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  48339825 cataggcatatacatttatatcattttattcccggaaatcaacaattataacttgaaacaaacacatcctaagt 48339752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 31435991 - 31435920
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  31435991 cataggcatatacatttctatcattttattctcaggaatcaacaaatataacttgaaacaaacacaccctaa 31435920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 43715367 - 43715304
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  43715367 atacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctaag 43715304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 1099201 - 1099267
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1099201 catagggatatacatttctatcattttattcccgggaatcaacaattataacttaaaacaaacacac 1099267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 43132225 - 43132154
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||| |||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||    
T  43132225 cataggcatatatattcctattattttattctcgagaatcaacaaatataacttgaaacaaacacaccctaa 43132154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 31611053 - 31611004
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattata 74  Q
    ||||| || ||||||||| |||||||||||||||||||||||||||||||    
T  31611053 catagacatatacattccaatcattttattcccgggaatcaacaattata 31611004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 45826796 - 45826848
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||||||||||| |||||| ||||  |||||||||||||||||||||||    
T  45826796 ctatcattttattccctggaatctacaacgataacttgaaacaaacacaccct 45826848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 55435447 - 55435390
Alignment:
Q  38 attcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    |||||||||||||||||||| || ||| ||||  ||||||||||||||| ||||||||    
T  55435447 attcctatcattttattcccaggtatctacaaaaataacttgaaacaaatacacccta 55435390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 53165793 - 53165733
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaa 85  Q
    |||| ||| ||| |||||||||||||||||   |||||||||||| |||||||||||||||    
T  53165793 cataagcatatatattcctatcattttatttatgggaatcaacaaatataacttgaaacaa 53165733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 29512704 - 29512751
Alignment:
Q  47 attttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||||||||| | ||| || |||||||||||||||||||||||||||    
T  29512704 attttattcccagaaattaaaaattataacttgaaacaaacacaccct 29512751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 9320439 - 9320405
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaaca 68  Q
    ||||||||||||||||||||||||| |||||||||    
T  9320439 atacattcctatcattttattcccgagaatcaaca 9320405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 6832003 - 6831954
Alignment:
Q  47 attttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| || |||||| |||| ||||| ||||||||||||||||||||    
T  6832003 attttatttccaggaatctacaaatataagttgaaacaaacacaccctaa 6831954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 10822786 - 10822733
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataactt 78  Q
    ||||| || ||||| | |||||||||||||||||| ||||||||| ||||||||    
T  10822786 catagacatatacacttctatcattttattcccggaaatcaacaaatataactt 10822733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 12228324 - 12228256
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||| ||| |||||||||||||| | ||||| ||||| ||||  || ||||||||||||||    
T  12228324 cataggcatatatatttctatcattttattcgcaggaattaacaactatattttaaaacaaacacaccc 12228256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 28770261 - 28770209
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||| |||||||||| |||||| || | |||||||||||| |||||||||||    
T  28770261 ctatctttttattcccaggaatctacgaatataacttgaaagaaacacaccct 28770209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 2430500 - 2430571
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430500 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 2430571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 3572633 - 3572558
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3572633 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccttagtga 3572558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 1597410 - 1597338
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1597410 cataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaag 1597338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 6978774 - 6978845
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6978774 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 6978845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 9115841 - 9115911
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9115841 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 9115911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 2632856 - 2632925
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2632856 cataggcatatacattcctattattttattcccgggaatcaacaattataacttgaaacaaacacaccct 2632925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 36361786 - 36361851
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 90  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36361786 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 36361851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 46666712 - 46666781
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46666712 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 46666781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 39930461 - 39930529
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39930461 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 39930529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 52630777 - 52630849
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52630777 catagacatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccctaag 52630849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 8332018 - 8332089
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8332018 cataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 8332089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 25789767 - 25789834
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25789767 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 25789834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 39329612 - 39329683
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39329612 catagacatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 39329683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 5806356 - 5806290
Alignment:
Q  28 aggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5806356 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 5806290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 6911497 - 6911566
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6911497 cataggcatatacattcttatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 6911566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 47037461 - 47037530
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47037461 cataggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 47037530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 49822985 - 49822916
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49822985 cataggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 49822916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 20260154 - 20260086
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20260154 cataggcatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccc 20260086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 9831938 - 9831872
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9831938 cataggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacac 9831872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 12190245 - 12190176
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  12190245 cataggcatgtacattcctatcattttattcccgaaaatcaacaattataacttgaaacaaacacaccct 12190176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 38964747 - 38964678
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38964747 cataagcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaccccct 38964678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 14788727 - 14788795
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    ||||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  14788727 catagacatatacattcctattattttattcccgggaatcaaaaattataacttgaaacaaacacaccc 14788795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 35187469 - 35187529
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35187469 atacatttctatcattttattcccgggaatcaacaattataacttgaaaaaaacacaccct 35187529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 32824926 - 32824992
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    |||||||| |||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  32824926 cataggcatatacattcctattattttatttccggaaatcaacaattataacttgaaacaaacacac 32824992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 4683442 - 4683373
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||||    
T  4683442 cataggcatatacattcctatcattttatttctgggaatcaacaattataaattgaaacaaagacaccct 4683373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 5518572 - 5518503
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  5518572 cataggcatatatatttctatcattttattcctgggaatcaacaaatataacttgaaacaaacacaccct 5518503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 51445148 - 51445083
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 90  Q
    |||||| | |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51445148 cataggtatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacaca 51445083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 32202390 - 32202330
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  32202390 atacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccct 32202330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 48916090 - 48916021
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| |||||||||||||| | ||||||||||| |||||||||||| |||||||||||    
T  48916090 cataggcatatacatttctatcattttattctctggaatcaacaaatataacttgaaataaacacaccct 48916021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 1007764 - 1007819
Alignment:
Q  38 attcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  1007764 attcatatcattttattctcgggaatcaacaaatataacttgaaacaaacacaccc 1007819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 50190831 - 50190767
Alignment:
Q  27 taggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    |||||| ||||||||||| ||||||||| |||| ||| |||||||||| ||||||||||||||||    
T  50190831 taggcatatacattcctagcattttatttccggaaattaacaattatatcttgaaacaaacacac 50190767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 52699521 - 52699462
Alignment:
Q  38 attcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    |||||||||||||||||||| |||||| || | ||||||||||||||||| |||||||||    
T  52699521 attcctatcattttattcccaggaatctacgaatataacttgaaacaaacgcaccctaag 52699462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 29091688 - 29091739
Alignment:
Q  43 tatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||||||||||  | ||||||||||| ||||||||||||||||||||||||    
T  29091688 tatcattttattatcaggaatcaacaaatataacttgaaacaaacacaccct 29091739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 37436689 - 37436630
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaaca 84  Q
    |||| ||| |||||||||||||||||||||| || |||||||||| |||||| |||||||    
T  37436689 catatgcatatacattcctatcattttattctcgtgaatcaacaaatataacatgaaaca 37436630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 31806807 - 31806759
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 90  Q
    |||||||||||||| | |||||| |||| ||||||||||||||||||||    
T  31806807 ctatcattttattctcaggaatctacaaatataacttgaaacaaacaca 31806759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 30241013 - 30241075
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 87  Q
    |||||||| ||| ||| ||||||||||||| ||   ||||||||| |||||||||||||||||    
T  30241013 cataggcatatatatttctatcattttattaccaaaaatcaacaaatataacttgaaacaaac 30241075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 13653872 - 13653917
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaac 87  Q
    |||||||||||||| | ||||||||||| | |||||||||||||||    
T  13653872 ctatcattttattctcaggaatcaacaaatttaacttgaaacaaac 13653917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 11014492 - 11014448
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaa 86  Q
    |||||||||||||||| |||||| |||  ||||||||||||||||    
T  11014492 ctatcattttattcccaggaatctacatatataacttgaaacaaa 11014448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 19065573 - 19065503
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19065573 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 19065503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 4765628 - 4765559
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4765628 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 4765559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 12970598 - 12970529
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12970598 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 12970529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 22935980 - 22935909
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22935980 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 22935909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 28602558 - 28602629
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28602558 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 28602629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 555774 - 555705
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  555774 catagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 555705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 14206889 - 14206820
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14206889 cataggcatatacatttctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 14206820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 18412212 - 18412281
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  18412212 cataggcatatacattcctatcattttattcccaggaatcaataattataacttgaaacaaacacaccct 18412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 11855723 - 11855658
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 90  Q
    |||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  11855723 cataggcatatacattcctatcattttattctcaggaatcaacaattataacttgaaacaaacaca 11855658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 29543083 - 29543014
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29543083 catagacatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccct 29543014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 6091718 - 6091782
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  6091718 cataggcatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacac 6091782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 36703877 - 36703945
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    ||||| || ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  36703877 catagacatatacatttctatcattttattcccgataatcaacaattataacttgaaacaaacacaccc 36703945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 27481360 - 27481429
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||||||||||||||||| ||   |||||| |||||||||||||||||||||||||||    
T  27481360 cataggcatatacattcctatcattttatttccaaaaatcaaaaattataacttgaaacaaacacaccct 27481429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 32535949 - 32536006
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  32535949 atacatttctatcattttattcctgggaatcaacaattataacttaaaacaaacacac 32536006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 8406898 - 8406959
Alignment:
Q  26 ataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 87  Q
    |||||||  ||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  8406898 ataggcatgtacattcctatcattttattctcgaaaatcaacaattataacttgaaacaaac 8406959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 42012230 - 42012174
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    ||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||    
T  42012230 ctatcattttattcccgagaatcaacaaatatagcttcaaacaaacacaccctaagt 42012174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 8646459 - 8646412
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaatta 72  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||    
T  8646459 catagacatatacattcctatcattttattcccgggaatcaacaatta 8646412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 6930664 - 6930714
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    |||||||||||||| | ||||||||||| |||||||||||| |||||||||    
T  6930664 ctatcattttattctcaggaatcaacaaatataacttgaaataaacacacc 6930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 20962606 - 20962659
Alignment:
Q  38 attcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    ||||||||||||||||||||  ||||| || | |||||||||||||||||||||    
T  20962606 attcctatcattttattcccaagaatctacgaatataacttgaaacaaacacac 20962659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 26637094 - 26637045
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    ||||||||||||||||   ||||||||| |||||||||||||||||||||    
T  26637094 ctatcattttattcccattaatcaacaaatataacttgaaacaaacacac 26637045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 25837914 - 25837987
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25837914 cataggcatgtacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 25837987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 12710648 - 12710720
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12710648 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 12710720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 18726687 - 18726619
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18726687 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 18726619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 35818492 - 35818421
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35818492 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 35818421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 37392614 - 37392543
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37392614 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaatacaccctaa 37392543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 38364084 - 38364155
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38364084 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 38364155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 1554422 - 1554353
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1554422 catagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 1554353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 16313575 - 16313502
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16313575 cataggtatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaagt 16313502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 32661001 - 32660932
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32661001 cataggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccct 32660932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 3050012 - 3050074
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 87  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3050012 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 3050074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 26602006 - 26601941
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 90  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26602006 cataggcatatacattcctatcattttattcccgggaatcaacaattataatttgaaacaaacaca 26601941  T

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Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 10896285 - 10896217
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10896285 cataggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacaccc 10896217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 41228780 - 41228712
Alignment:
Q  27 taggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41228780 taggcatatacattcctaccattttattcccgggaattaacaattataacttgaaacaaacacacccta 41228712  T

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Target: chr8; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 38132805 - 38132734
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    ||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38132805 catagacatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaa 38132734  T

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Target: chr8; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 42755870 - 42755937
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42755870 cataggcatatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacacacc 42755937  T

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Target: chr8; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 26062147 - 26062216
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26062147 cataggaatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 26062216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 18298115 - 18298183
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  18298115 cataggtatatacattcctatcattttattcccgagaatcaaaaattataacttgaaacaaacaaaccc 18298183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 7931251 - 7931306
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  7931251 atacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacac 7931306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 40197135 - 40197076
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  40197135 atacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacataccc 40197076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 5020543 - 5020479
Alignment:
Q  40 tcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtgacgtt 104  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||| |||||| |||||    
T  5020543 tcctatcattttattcccatgaatcaacaaatataacttgaaacaaacacactctaagtcacgtt 5020479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 7317376 - 7317445
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||| |||||||||||||||||   |  ||||||||| ||||||||||||||||||||||||    
T  7317376 cataggcatatatattcctatcattttatttttgaaaatcaacaaatataacttgaaacaaacacaccct 7317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 33444676 - 33444627
Alignment:
Q  43 tatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  33444676 tatcattttattctcaggaatcaacaaatataacttgaaacaaacacacc 33444627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 8635664 - 8635703
Alignment:
Q  52 attcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  8635664 attcctgggaatcaacaattataacttgaaacaaacacac 8635703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 21137200 - 21137134
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    |||||||| ||| ||| |||| ||||||||| | ||||||||||| |||||||| ||||||||||||    
T  21137200 cataggcatatatatttctattattttattctcaggaatcaacaaatataacttcaaacaaacacac 21137134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 35394413 - 35394464
Alignment:
Q  45 tcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    ||||||||||| || ||||||| || |||||||||||||||||| |||||||    
T  35394413 tcattttattctcgtgaatcaataaatataacttgaaacaaacaaaccctaa 35394464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 25899657 - 25899702
Alignment:
Q  47 attttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    ||||||||||| |||||| |||| ||||| ||||||||||||||||    
T  25899657 attttattcccaggaatctacaaatataatttgaaacaaacacacc 25899702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 41432756 - 41432804
Alignment:
Q  38 attcctatcattttattcccgggaatcaacaattataacttgaaacaaa 86  Q
    |||||||||||||||||||| |||||| || | |||||||| |||||||    
T  41432756 attcctatcattttattcccaggaatccacgaatataacttaaaacaaa 41432804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 7053638 - 7053569
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7053638 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 7053569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 2657703 - 2657772
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657703 cataggtatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 2657772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 8029336 - 8029405
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8029336 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8029405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 1317021 - 1317089
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1317021 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 1317089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 14171016 - 14171087
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14171016 cataggcatatagattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccctaa 14171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 18897924 - 18897989
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 90  Q
    |||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  18897924 cataggcatatacatttctatcactttatttccgggaatcaacaattataacttgaaacaaacaca 18897989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 7344150 - 7344077
Alignment:
Q  26 ataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtg 99  Q
    ||||||| |||||||||||||||||||||| ||| |||  |||||||||| ||||||| |||||||||| ||||    
T  7344150 ataggcatatacattcctatcattttattctcggaaatttacaattataatttgaaacgaacacacccttagtg 7344077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 16968928 - 16968989
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaa 86  Q
    ||||| || ||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  16968928 catagacatatagattcctatcattttattctcaggaatcaacaattataacttgaaacaaa 16968989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 6705833 - 6705760
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    ||||| || ||| ||| ||| |||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  6705833 catagacatatatatttctaccattttattccaatgaatcaacaaatataacttgaaacaaacacaccctaagt 6705760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 10246258 - 10246222
Alignment:
Q  57 cgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||||||||||||||||||||||||||||||||    
T  10246258 cgggaatcaacaattataacttgaaacaaacacaccc 10246222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 3869525 - 3869577
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||||||||||| | |||| ||||  |||||||||||||||||||||||    
T  3869525 ctatcattttattcccagaaatctacaaaaataacttgaaacaaacacaccct 3869577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 10849834 - 10849784
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    |||||||||||||||| |||||| | ||  |||||||||||||||||||||    
T  10849834 ctatcattttattcccaggaatctataaaaataacttgaaacaaacacacc 10849784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 346413 - 346344
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  346413 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 346344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 39995199 - 39995130
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39995199 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39995130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 42674729 - 42674656
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42674729 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 42674656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 21737468 - 21737397
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21737468 catagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 21737397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 6171794 - 6171863
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6171794 cataggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccct 6171863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 11071608 - 11071677
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11071608 cataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 11071677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 9733914 - 9733846
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 93  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9733914 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 9733846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 34356768 - 34356696
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34356768 catagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 34356696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 5770178 - 5770109
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  5770178 cataggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacataccct 5770109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 14777566 - 14777497
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14777566 cataggcatatacattccaatcattttattcccgggaatcaacaattataaattgaaacaaacacaccct 14777497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 37533955 - 37534024
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37533955 catagacatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 37534024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 4559562 - 4559634
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 97  Q
    |||||||| ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  4559562 cataggcatatacattccaatcattttattcttgggaatcaacaattataacttgaaacaaacacaccctaag 4559634  T

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Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 2050869 - 2050935
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2050869 cataggtatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacac 2050935  T

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Target: chr2; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 17965986 - 17966060
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagtg 99  Q
    ||||| || ||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  17965986 catagacatatacattccaatcattttattatcgggaatcaacaattataacttgaaacaaacacaccctaagtg 17966060  T

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Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 20426551 - 20426481
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  20426551 cataggcatataaattcctatcattttattcccgggaatcaacaaatataatttgaaacaaacacacccta 20426481  T

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Target: chr2; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 37192525 - 37192591
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37192525 catagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 37192591  T

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Target: chr2; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 41729198 - 41729128
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 95  Q
    |||||||| || ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  41729198 cataggcatatccattcctatcattttattcccgggaataaaaaattataacttgaaacaaacacacccta 41729128  T

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Target: chr2; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 2521678 - 2521747
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  2521678 cataggcatatacattccaatcattttattttcgggaatcaacaattataacttgaaacaaacacaccct 2521747  T

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Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 28311765 - 28311701
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28311765 cataggcatatatattcctatcattttattcccgggaatcaacaaatataacttgaaacaaacac 28311701  T

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Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 40950927 - 40950856
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||| ||| ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40950927 cataagcatatatatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaa 40950856  T

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Target: chr2; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 41750532 - 41750599
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 92  Q
    |||||||| ||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  41750532 cataggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacacc 41750599  T

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Target: chr2; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 45409253 - 45409322
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| |||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||    
T  45409253 cataggcatatacattcctatcattttatacttgggaatcaacaaatataacttgaaacaaacacaccct 45409322  T

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Target: chr2; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 638596 - 638660
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    ||||| || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  638596 catagacatatacattcctatcattttatttccggaaatcaacaattataacttgaaacaaacac 638660  T

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Target: chr2; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 37233432 - 37233496
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    |||||||| |||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37233432 cataggcatatatgttcctatcattttattcccgggaatcaacaaatataacttgaaacaaacac 37233496  T

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Target: chr2; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 26310281 - 26310335
Alignment:
Q  34 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaaca 88  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  26310281 atacatttctatcattttattcccgggaatcaacaattataactttaaacaaaca 26310335  T

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Target: chr2; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 27358031 - 27357962
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||| || |||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  27358031 catagacatatacatccctatcattttatacctgggaatcaacaaatataacttgaaacaaacacaccct 27357962  T

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Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 6571690 - 6571759
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||| ||| ||||||||||||||||| |||| ||||||||| |||||||| ||||||| |||||||    
T  6571690 cataggcatatatattcctatcattttatttccggaaatcaacaaatataactttaaacaaatacaccct 6571759  T

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Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 13760948 - 13761013
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 90  Q
    |||||| | ||| |||||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  13760948 cataggtacatatattcctatcattttattcccgaaaatcaataattataacttgaaacaaacaca 13761013  T

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Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 14832813 - 14832877
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 89  Q
    |||||||| ||| ||| |||||||||||||||  ||||||||||| |||||||||||||||||||    
T  14832813 cataggcatatatatttctatcattttattcctaggaatcaacaaatataacttgaaacaaacac 14832877  T

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Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 40570045 - 40570092
Alignment:
Q  47 attttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  40570045 attttattcccaggaatctacaattataacttgaaacaaacacaccct 40570092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 1988314 - 1988387
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 98  Q
    ||||||||  || ||| |||||||||||||||| | ||||||||| |||||||| |||||||||||||| ||||    
T  1988314 cataggcatgtatatttctatcattttattcccagaaatcaacaaatataacttcaaacaaacacacccaaagt 1988387  T

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Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 45694204 - 45694262
Alignment:
Q  38 attcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||||||||||||||| | |||| || | ||||||||||||||||| ||||||||    
T  45694204 attcctatcattttattcccagaaatctacgaatataacttgaaacaaacgcaccctaa 45694262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 7007582 - 7007647
Alignment:
Q  31 caaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||| ||| | |||||||||| |||  |||||||||| |||||||||||| |||||||||||||    
T  7007582 caaatatatttccatcattttatccccaagaatcaacaaatataacttgaaataaacacaccctaa 7007647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 18713725 - 18713660
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 90  Q
    |||||||| ||| |||  |||||||||||| ||  |||||||||| ||||||||||||||||||||    
T  18713725 cataggcatatatatttatatcattttattaccatgaatcaacaaatataacttgaaacaaacaca 18713660  T

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Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 14403283 - 14403232
Alignment:
Q  43 tatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    |||||||||||| || ||||||||||| || ||||| |||||||||||||||    
T  14403283 tatcattttatttccaggaatcaacaaatacaacttcaaacaaacacaccct 14403232  T

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Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 25455049 - 25455096
Alignment:
Q  47 attttattcccgggaatcaacaattataacttgaaacaaacacaccct 94  Q
    ||||||||| | |||||| |||| ||||||||||||||||||||||||    
T  25455049 attttattctcaggaatctacaaatataacttgaaacaaacacaccct 25455096  T

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Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 14253525 - 14253578
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataactt 78  Q
    ||||| || ||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  14253525 catagacatatatatttctatcattttattcccgagaatcaacaaatataactt 14253578  T

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Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 24499460 - 24499509
Alignment:
Q  42 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 91  Q
    ||||||||||||| |   |||||||||| |||||||||||||||||||||    
T  24499460 ctatcattttatttctatgaatcaacaaatataacttgaaacaaacacac 24499509  T

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Target: scaffold0189 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 29020 - 28957
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaaca 88  Q
    |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29020 cataggcatatacattcctatcattttattcccgaaaatcaacaattataacttgaaacaaaca 28957  T

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Target: scaffold0702 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 3633 - 3562
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||| |||  ||| ||||||||||  | |||| |||| ||||||||||||||||||||||||||    
T  3633 cataggcatatatatttttataattttattcctagaaatctacaaatataacttgaaacaaacacaccctaa 3562  T

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Target: scaffold0662 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 4471 - 4542
Alignment:
Q  25 cataggcaaatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 96  Q
    |||||||| ||| |||  ||| ||||||||||  | |||| |||| ||||||||||||||||||||||||||    
T  4471 cataggcatatatatttttataattttattcctagaaatctacaaatataacttgaaacaaacacaccctaa 4542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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