View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4658_low_11 (Length: 411)

Name: NF4658_low_11
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4658_low_11
NF4658_low_11
[»] chr8 (4 HSPs)
chr8 (17-169)||(43623362-43623513)
chr8 (235-287)||(43623251-43623303)
chr8 (318-363)||(43623175-43623220)
chr8 (362-394)||(6244417-6244449)
[»] chr4 (1 HSPs)
chr4 (361-394)||(10085380-10085413)
[»] chr6 (3 HSPs)
chr6 (362-394)||(16465433-16465465)
chr6 (362-394)||(20898348-20898380)
chr6 (345-394)||(22732366-22732417)
[»] chr5 (2 HSPs)
chr5 (362-394)||(21837038-21837070)
chr5 (362-394)||(42877977-42878009)
[»] chr3 (2 HSPs)
chr3 (362-394)||(31990962-31990994)
chr3 (362-394)||(52701056-52701088)
[»] chr2 (4 HSPs)
chr2 (362-394)||(9111464-9111496)
chr2 (362-394)||(30982516-30982548)
chr2 (362-394)||(31435933-31435965)
chr2 (362-394)||(32319312-32319344)
[»] chr1 (1 HSPs)
chr1 (362-394)||(27551863-27551895)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 43623513 - 43623362
Alignment:
Q  17 cagacaacccttatttaagtgtcatttgcatcatatagcactactattaaattaaaaaagaaactagttaaaaaagttacgacaccagtggctcacccac 116  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||  | ||||||||| |||||||||||||||||||     
T  43623513 cagacaacccttatttaagtgtcatttgcatcatatagcactgcttttaaattaaaaaagaaactaagttaaaaagttatgacaccagtggctcacccat 43623414  T
Q  117 attttatcgtattcagtgtcatgtgttatttcatttgcatcatatagcactgc 169  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43623413 attttatcgtattcagtgtcatgtgtta-ttcatttgcatcatatagcactgc 43623362  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 43623303 - 43623251
Alignment:
Q  235 tcgaaactcacacactaaggacagagaagtggaacattgcagattcagggtaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43623303 tcgaaactcacacactaaggacagagaagtggaacattgcagattcagggtaa 43623251  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 43623220 - 43623175
Alignment:
Q  318 aaaaataaacaagtctagcataaaaagaaaataagggttaaatatt 363  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43623220 aaaaataaacaagtctaacataaaaagaaaataagggttaaatatt 43623175  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Complemental strand, 6244449 - 6244417
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||||||||||||||||||| ||||||||||||    
T  6244449 tttttgtccctataaaattgggaccttttaagt 6244417  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 394
Target Start/End: Original strand, 10085380 - 10085413
Alignment:
Q  361 atttttgtccctataaaattgagaccttttaagt 394  Q
    ||||| ||||||||||||||||||||||||||||    
T  10085380 attttagtccctataaaattgagaccttttaagt 10085413  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Complemental strand, 16465465 - 16465433
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||| ||||||||||||||||||||||||||||    
T  16465465 ttttagtccctataaaattgagaccttttaagt 16465433  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Complemental strand, 20898380 - 20898348
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||| ||||||||||||||||||||||||||||    
T  20898380 ttttagtccctataaaattgagaccttttaagt 20898348  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 22732417 - 22732366
Alignment:
Q  345 aaaataagggttaaatat--ttttgtccctataaaattgagaccttttaagt 394  Q
    |||| |||||||||||||  ||||||||||| ||||||| ||||||||||||    
T  22732417 aaaaaaagggttaaatatgtttttgtccctacaaaattgggaccttttaagt 22732366  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 21837038 - 21837070
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||| ||||||||||||||||||||||||||||    
T  21837038 ttttagtccctataaaattgagaccttttaagt 21837070  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Complemental strand, 42878009 - 42877977
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||| ||||||||||||||||||||||||||||    
T  42878009 ttttggtccctataaaattgagaccttttaagt 42877977  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 31990962 - 31990994
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||| ||||||||||||||||||||||||||||    
T  31990962 ttttggtccctataaaattgagaccttttaagt 31990994  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 52701056 - 52701088
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||| ||||||||||||||||||||||||||||    
T  52701056 ttttggtccctataaaattgagaccttttaagt 52701088  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 9111464 - 9111496
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||||||||||||||||||| ||||||||||||    
T  9111464 tttttgtccctataaaattgggaccttttaagt 9111496  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 30982516 - 30982548
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||| ||||||||||||||||||||||||||||    
T  30982516 ttttggtccctataaaattgagaccttttaagt 30982548  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 31435933 - 31435965
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||| ||||||||||||||||||||||||||||    
T  31435933 ttttagtccctataaaattgagaccttttaagt 31435965  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Complemental strand, 32319344 - 32319312
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||||||||||||||||||| ||||||||||||    
T  32319344 tttttgtccctataaaattgggaccttttaagt 32319312  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Complemental strand, 27551895 - 27551863
Alignment:
Q  362 tttttgtccctataaaattgagaccttttaagt 394  Q
    |||| ||||||||||||||||||||||||||||    
T  27551895 ttttggtccctataaaattgagaccttttaagt 27551863  T

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