View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_low_14 (Length: 384)
Name: NF4658_low_14
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 373
Target Start/End: Original strand, 14068325 - 14068681
Alignment:
| Q |
16 |
gttgtcactttcttcgtagcatgttggattttattgcctcaaccgacataatcatgacatgccacattttcttgtttttaggtaatatattttagtaaat |
115 |
Q |
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| T |
14068325 |
gttgtcactttcttcgtagcatgttggattttattgcctcaaccgacataatcatgacatgtcacattttcttgtttttaggtaatatattttagtacat |
14068424 |
T |
|
| Q |
116 |
tattttaaaagttnnnnnnnnnttaagagttactccttatnnnnnnnntagttggattattaaaaagaatatttcaagaatataagaaaaactacatagt |
215 |
Q |
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| T |
14068425 |
tattttaaaagttgaaaaaaaattaagagttactccttataaaaaaaatagttggattattaaaaagaatatttcaagaatataagaaaaactacatagt |
14068524 |
T |
|
| Q |
216 |
gtaacccatgttcattaaaagaataaagccagaaaacatgataatcaaaagtaaaattacgannnnnnnaccttcaaccactaaaaagattgtagcttaa |
315 |
Q |
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| T |
14068525 |
gtaacccatgtacattaaaagaataaagccagcaaacatgataatcaaaagtaaaattac-aattttttaccttcaaccaccaaaaagattatagcttaa |
14068623 |
T |
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| Q |
316 |
ttttatctagtaattagggcacatggacttctttgttgtcgaaaattctattattcat |
373 |
Q |
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| T |
14068624 |
ttttatctagtaattagggcacatggacttctttgttgttgaaaattctattattcat |
14068681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 882005 - 881933
Alignment:
| Q |
298 |
aaaaagattgtagcttaattttatctagtaattagggcacatggacttctttgttgtcgaaaattctattatt |
370 |
Q |
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| T |
882005 |
aaaaagatagtagcttaattttatcaagcaattgagacaactagaattctttgttgtcgaaaattttattatt |
881933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 9145662 - 9145623
Alignment:
| Q |
286 |
ccttcaaccactaaaaagattgtagcttaattttatctag |
325 |
Q |
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| T |
9145662 |
ccttcaaccaccaaaaagattggagcttaattttatctag |
9145623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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