View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4658_low_15 (Length: 372)
Name: NF4658_low_15
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 3 - 361
Target Start/End: Original strand, 10458319 - 10458684
Alignment:
| Q |
3 |
atcaagaacataatgtgtttctatttcatcaagtatggttcaagatgtgat-ttttctttaagtcttgtaacct-gttcaacataatgtgttgtcctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
10458319 |
atcaagaacataatgtgtttctatttcaacaagtatagttgaagatgtgatattttctttaagtcttgtaaccttgttaaacataatgtgttgtcctctt |
10458418 |
T |
|
| Q |
101 |
tttcatgagctat----ctattaaagcgtcatcttttgttaagaaatgttagaattaggtatgtttctatgatacttgtagccataaatgttacctttta |
196 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
10458419 |
tttcatgagctatatatctatttaagcgtcatcttttgttaagaaatgttagaattaggtatgtttctatgatgcttgtagccataaatgttatctttta |
10458518 |
T |
|
| Q |
197 |
aatgtaattatataatgaaatcgattttatactcaattttaactcatttgattgataaatctaattcaacaagttgacaaataacttgagttatttttga |
296 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10458519 |
aatgtaattatataatgaaatcgattttaacctcaattttacctcatttgattgataaatctaattcaacaagttgacaaataactt--gttatttttga |
10458616 |
T |
|
| Q |
297 |
gttaattcgattcaagttgtc-----aaccctaatttaccaattctgttaaatgaaagtttttcattcat |
361 |
Q |
| |
|
|||||||||||||| ||| | |||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10458617 |
gttaattcgattca--ttgacaacgtaaccttaatttaccaattcagttaaatgaaagtttttcattcat |
10458684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University