View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_low_16 (Length: 336)
Name: NF4658_low_16
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 18544122 - 18543812
Alignment:
| Q |
7 |
tccaagaatatgtgtttgcggcatacattagcatatgtagagtgatatatccaaataaactgcaagaaatgtctacaatcttaaatagagcaagaaatgt |
106 |
Q |
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| T |
18544122 |
tccaaaaatatgtgtttgcggcatacattagcatatgtagagtgatatatccaaatagactgcaagaaatgtctacaatcttaaatagagcaagaaatgt |
18544023 |
T |
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| Q |
107 |
ctacaatcttatgtataagctgtttttataacagacaagaaaataaagccaaactcttttcataagttataagttgtttttctgatcagtataccaacag |
206 |
Q |
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| T |
18544022 |
ctacaatcttatgtataagctgtttttataacagacgagaaaataaagccaaactcttttcataagttataagttgtttttctgatcagtataccaacag |
18543923 |
T |
|
| Q |
207 |
aaatgaaaacaaggtgccaagaaatagtgttacctgtataatgggaaaatgttttccatgtaaaatgttccaacttttttctccattaattgttgagata |
306 |
Q |
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| T |
18543922 |
aaatgaaaacaaggtgccaagaaatagtgttacctgtataatgggaaaatgttttccatgtaaaatgttccaacttttttctccattaattgttgagata |
18543823 |
T |
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| Q |
307 |
ctattcttaat |
317 |
Q |
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| T |
18543822 |
ctattcttaat |
18543812 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 3757986 - 3758044
Alignment:
| Q |
114 |
cttatgtataagctgtttttataacagacaagaaaataaagccaaactcttttcataag |
172 |
Q |
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| T |
3757986 |
cttatgtataagctatttttgtaacaaaatataaaataaagtcaaactcttttcataag |
3758044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 28340525 - 28340454
Alignment:
| Q |
117 |
atgtataagctgtttttataacagacaagaaaataaagccaaactcttttca--taagttataagttgtttt |
186 |
Q |
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| T |
28340525 |
atgtataagctatttcttcaacaaacaataaaataaagtcaaactgttttcatgtaagttataagttgtttt |
28340454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 5998833 - 5998764
Alignment:
| Q |
115 |
ttatgtataagctgtttttataacagacaagaaaataaagccaaactcttttcataagttataagttgtttt |
186 |
Q |
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| T |
5998833 |
ttatatataagctatttttataacaaaagataaaataaagttaaact--tttcataagttataagttgtttt |
5998764 |
T |
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