View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4658_low_19 (Length: 295)

Name: NF4658_low_19
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4658_low_19
NF4658_low_19
[»] chr5 (1 HSPs)
chr5 (1-295)||(42280152-42280446)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 42280446 - 42280152
Alignment:
Q  1 tggcaaatgatggcgtagcgagccaagccctgtgcattttgctggatagacaactcagagggctcattgggaccaatcttgaggaccgcacgccacttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42280446 tggcaaatgatggcgtagcgagccaagccctgtgcattttgctggatagacaactcagagggctcattgggaccaatcttgaggaccgcacgccacttgg 42280347  T
Q  101 caaaccgcgctccagctttgtaatactgctggcatctagctccaagggagtcaaaaccttgtgttgttgtttcaccatttgttccagctaattcaataac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42280346 caaaccgcgctccagctttgtaatactgctggcatctagctccaagggagtcaaaaccttgtgttgttgtttcaccatttgttccagctaattcaataac 42280247  T
Q  201 acccttgtcaactttgatgcctggtatgacattgttctcttggaggatttcaacaaaagtcttcccctaggaggaattctggtaaagagattcct 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  42280246 acccttgtcaactttgatgcctggtatgacattgttctcttggaggatttcaacaaaaggcttcccctcggaggaattctggtaaagagtttcct 42280152  T

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