View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_low_20 (Length: 288)
Name: NF4658_low_20
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 43867643 - 43867369
Alignment:
| Q |
1 |
ccatgcacttttggtaatttgctacaggaatattaatggaggttaatgggacccaccaattggtatgatcttagtgttgattggctagagagttgaagtt |
100 |
Q |
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| T |
43867643 |
ccatgcacttttggtaatttgctacaggaatattaatggaggttaatgggacccaccaattggtatgatcttagtgttgattggctagagagttgaagtt |
43867544 |
T |
|
| Q |
101 |
aatcttattctctgaattctaattggttgtctttttaattataggatttcttatggacccattagggtttgtgcattaaatttttgagtaagacatattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867543 |
aatcttattctctgaattctaattggttgtctttttaattataggatttcttatggacccattagggtttgtgcattaaatttttgagtaagacatattt |
43867444 |
T |
|
| Q |
201 |
gttgtgttacatgtataataattcaataatgtctgctatttgaggtcccctctccttaggttgctttcatctcac |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867443 |
gttgtgttacatgtataataattcaataatgtctgctatttgaggtcccctctccttaggttgctttcatctcac |
43867369 |
T |
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