View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_low_25 (Length: 253)
Name: NF4658_low_25
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 46502760 - 46502979
Alignment:
| Q |
25 |
atgtattgatcggactttatttaacttctaataaactcatcagggtctctttcatctaagaatcaaagggataacaaaaactaactaactaaaaacacat |
124 |
Q |
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| T |
46502760 |
atgtattggtcagactttacttagcttccaataaactcatcagggtctctttcatctaagaatcaaagggataacaaaaactagccaactaaaaacacat |
46502859 |
T |
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| Q |
125 |
gacttgagaattcaaatgacttnnnnnnnncaaagacaaatttacatatgattttgtaattttaatatatgtatgtac-tatttaacatttaaggatgaa |
223 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46502860 |
gacttgagaattcaaatgacttaaaaaaaacaaagacaaatttacatatgattttgtaattttaatatatgtatgtacttatttaacatttaaggatgaa |
46502959 |
T |
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| Q |
224 |
aaagactatttagccctatg |
243 |
Q |
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|||||||||||||||||||| |
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| T |
46502960 |
aaagactatttagccctatg |
46502979 |
T |
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