View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_low_32 (Length: 232)
Name: NF4658_low_32
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 38789119 - 38788899
Alignment:
| Q |
6 |
agtttcagcgacaagaacaagagtcttgatataacaatcatggtggtgatatacatgagttatgcctcgaagatccagtctccccaaaccaattcttgat |
105 |
Q |
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| T |
38789119 |
agtttcagcgacaagaacaagaatcttgatataacaatcctggtggtgtgatatatgagttatgcctcaaagatccagtctccccaaaccaattcttgat |
38789020 |
T |
|
| Q |
106 |
gaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagtaactcttttccattaagatcttctcgctagc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38789019 |
gaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagtaactcttttccattaagatcttctcgctagc |
38788920 |
T |
|
| Q |
206 |
gatttcccctacccaccaacc |
226 |
Q |
| |
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||||||||||||||||||||| |
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| T |
38788919 |
gatttcccctacccaccaacc |
38788899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 38782936 - 38782727
Alignment:
| Q |
17 |
caagaacaagagtcttgatataacaatcatggtggtgatatacatgagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatc |
116 |
Q |
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||||||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38782936 |
caagaacaagaatcttgatataacaatcgtggtggtgtgatatatgagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatc |
38782837 |
T |
|
| Q |
117 |
tgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagtaactcttttccattaagatcttctcgctagcgatttccccta |
216 |
Q |
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| T |
38782836 |
tgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagcaactcttttccatcaagatcttctcgctagcgattttaccta |
38782737 |
T |
|
| Q |
217 |
cccaccaacc |
226 |
Q |
| |
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|||||||||| |
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|
| T |
38782736 |
cccaccaacc |
38782727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 55 - 226
Target Start/End: Original strand, 38743337 - 38743508
Alignment:
| Q |
55 |
tatacatgagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtc |
154 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38743337 |
tatacataagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtc |
38743436 |
T |
|
| Q |
155 |
aaaatacacactatagtagtaactcttttccattaagatcttctcgctagcgatttcccctacccaccaacc |
226 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
38743437 |
aaaatacacactatagtagtaactcttttccatcaagatcttctcgctagcaattttccctacccaccaacc |
38743508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 30962708 - 30962924
Alignment:
| Q |
8 |
tttcagcgacaagaacaagagtcttgatataacaatcatggtggtgatatacatgagttatgcctcgaagatccagtctccccaaaccaattcttgatga |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||| ||||||||| |||||||| |||||||||| ||| | ||||||| |
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| T |
30962708 |
tttcagcgacaagaacaatagtcttgat-taacaatcatgatggtgatatatatgaattatgcctccaagatccactctccccaaaacaacttttgatga |
30962806 |
T |
|
| Q |
108 |
accctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagtaactcttttccattaagatcttctcgctagcga |
207 |
Q |
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|||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||| | |
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| T |
30962807 |
accctaatttgatcaca-gggtagtaaatagtttgatgggtgtagtcaaaatacacactatagtagtaattgttttccatgaggatcttctcgctagcaa |
30962905 |
T |
|
| Q |
208 |
tttcccctacccaccaacc |
226 |
Q |
| |
|
||| ||||||||||||||| |
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|
| T |
30962906 |
ttttccctacccaccaacc |
30962924 |
T |
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