View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4658_low_5 (Length: 515)
Name: NF4658_low_5
Description: NF4658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4658_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 3435716 - 3435390
Alignment:
| Q |
20 |
ttatctaccctcaacaatcgaccaaaatcaaaagcacataatctnnnnnnnnttccattccatgcttgcaaagaaactccataaattcgaatccgtgcac |
119 |
Q |
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| T |
3435716 |
ttatctaccctcaacaatcgaccaaaatcaaaagcacataatctaaaaaatttcccattccatgcttgcaaagaaactccgtaaattcgaatccgtgaac |
3435617 |
T |
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| Q |
120 |
ctccttcaaatttttaaaatatatattccaattaaaagatactattccacgcaatagtatctcttatactctctttaatccaatttttattatcccaaaa |
219 |
Q |
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| T |
3435616 |
ctctttcaaat--ttaacaca-atctt---------------tattccatgcaatagtatctcttatactctctttaatccaatttttattatcccaaaa |
3435535 |
T |
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| Q |
220 |
ataactaatgttgagatttcatttaaaatatatattacgaaatcgtt-ttgtaaaaagattcgttttggaaatgaagttggctcctttannnnnnnaatg |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3435534 |
ataactaatgttgagattccatttaaaatatatattacgaaatcgttgttgtaaaaagattcgttttggaaatgaagttggctcctttatttttttaatg |
3435435 |
T |
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| Q |
319 |
ttattaaaaaactaagtaaactttcatttcttagaacacacaaat |
363 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3435434 |
ttattaaaaaactaagtaaactttcatctcttagaacacacaaat |
3435390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 505
Target Start/End: Complemental strand, 3435304 - 3435249
Alignment:
| Q |
450 |
gttcgttaattttctatccccgtgaccaattacaagcattcaccataccccctatg |
505 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3435304 |
gttcgttaattttctatccccgtgaccaattataagcattcaccataccccctatg |
3435249 |
T |
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