View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4659-Insertion-3 (Length: 985)

Name: NF4659-Insertion-3
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4659-Insertion-3
NF4659-Insertion-3
[»] chr5 (1 HSPs)
chr5 (7-985)||(2653734-2654707)
[»] chr8 (1 HSPs)
chr8 (663-796)||(40966325-40966458)


Alignment Details
Target: chr5 (Bit Score: 921; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 921; E-Value: 0
Query Start/End: Original strand, 7 - 985
Target Start/End: Complemental strand, 2654707 - 2653734
Alignment:
Q  7 aatatcaaccactagaacttttctctcagcctcaggtaaagattaaatctcatgtagcccttctttaaggaatttagatacatggaattttgtacaccag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2654707 aatatcaaccactagaacttttctctcagcctcaggtaaagattaaatctcatgtagcccttctttaaggaatttagatacatggaatttcgtacaccag 2654608  T
Q  107 ttctcaaattaaataagaatatttgacagacgtgattttgattttataaaattgatttggttgaatgtgtgtattcatatgcacctatcaaataccagga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2654607 ttctcaaattaaataagaatatttgacagacgtgattttgattttataaaattgatttggttgaatgtgtgtattcatatgcacctatcaaataccagga 2654508  T
Q  207 acatgtatttaagaatacagtcatgctattagtttccctgtacttatttttccgcaatttaaaatcatgtttggtcaagtacctttgttccaatcgatta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2654507 acatgtatttaagaatacagtcatgctattagtttccctgtacttatttttccgcaatttaaaatcatgtttggtcaagtacctttgttccaatcgatta 2654408  T
Q  307 aatcgtcataattcaatttttgtgctctcttttctcatatgatggtagcaaattttatagaacaattgcacaagctagtcagcgccaaataatgaaaccg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2654407 aatcgtcataattcaatttttgtgctctcttttctcatatgatggtagcaaattttatagaacaattgcacaagctagtcagcgccaaataatgaaaccg 2654308  T
Q  407 cgctagtcagaaaattcttcaaactaactaggaaattatttcctgttatttgttttcaatggcatttgatataaagaattaaagatagaatgcatagaca 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2654307 cgctagtcagaaaattcttcaaactaactaggaaattatttcctgttatttgttttcaatggcatttgatataaagaattaaagatagaatgcatagaca 2654208  T
Q  507 aacagttaaacaaacaaaaagataattagcctaattggacaacaaacaatgagtttttgattggatctttcactgtttcattaagtttttcagtaacatg 606  Q
    | |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2654207 atcagttaaacaagaaaaaagataattagcctaattggacaacaaacaatgagtttttgattggatctttcactgtttcattaagtttttcagtaacatg 2654108  T
Q  607 cttcaattatgagcctctgatgttttctatagtacttacattttttatctatttttggtgcacagggaaccaaagaaattaatcctacctttagcatgac 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2654107 cttcaattatgagcctctgatgttttctatagtacttacattttttatctatttttggtgcacagggaaccaaagaaattaatcctacctttagcatgac 2654008  T
Q  707 attagttgaagatgggcaatatgcagttgatttccatgccaaattatcttcattacaagctttctccatttgcgtcgccattttgcatggcacatctacc 806  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2654007 attagttgaagaggggcaatatgcagttgatttccatgccaaattatcttcattacaagctttctccatttgcgtcgccattttgcatggcacatctacc 2653908  T
Q  807 ttcagcgctaaggcagaacaggcgaaaaatcaaccgttatctcaatgcagttcgttaaatacacttattgaagaagaagtagaattattcatcaaatcag 906  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  2653907 ttcagtgctaaggcagaacaggcgaaaaatcaaccgttatctcaatgcagttcgttaaatacacttattgaa---gaagtagaattattcatcaaatcag 2653811  T
Q  907 tcatagcagaggagaagagaaaaatgtctaatattcacaagggaaattcatcgacccttctatgctgaacccgcctttt 985  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||    
T  2653810 tcatagcagaggagaagagaaaaatgtctaatattcacaaggg-aattcatcgaccc-tctatgctgaaccagcctttt 2653734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 663 - 796
Target Start/End: Original strand, 40966325 - 40966458
Alignment:
Q  663 ggtgcacagggaaccaaagaaattaatcctacctttagcatgacattagttgaagatgggcaatatgcagttgatttccatgccaaattatcttcattac 762  Q
    |||||||||||| | ||||||| || |||||| || ||||||| | | || ||||  ||||| ||||| |||||||| ||||| ||| ||||  ||||||    
T  40966325 ggtgcacagggagcaaaagaaagtagtcctactttcagcatgaaaatggtcgaagcggggcattatgctgttgattttcatgcaaaactatccacattac 40966424  T
Q  763 aagctttctccatttgcgtcgccattttgcatgg 796  Q
    |||| |||||||| || || ||||||||||||||    
T  40966425 aagcattctccatctgtgttgccattttgcatgg 40966458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University