View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4659-Insertion-4 (Length: 850)

Name: NF4659-Insertion-4
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4659-Insertion-4
NF4659-Insertion-4
[»] chr6 (8 HSPs)
chr6 (8-563)||(6474201-6474756)
chr6 (623-850)||(6473913-6474140)
chr6 (40-133)||(6463538-6463630)
chr6 (794-845)||(6464585-6464636)
chr6 (630-680)||(13036188-13036238)
chr6 (795-838)||(6495926-6495969)
chr6 (796-836)||(6525625-6525665)
chr6 (795-838)||(6462703-6462746)
[»] chr7 (1 HSPs)
chr7 (361-419)||(8982795-8982853)
[»] chr1 (1 HSPs)
chr1 (429-473)||(47165216-47165260)
[»] chr3 (2 HSPs)
chr3 (426-473)||(31189397-31189444)
chr3 (429-478)||(5415803-5415852)
[»] chr5 (2 HSPs)
chr5 (433-478)||(8255047-8255092)
chr5 (429-478)||(37722895-37722944)
[»] chr4 (1 HSPs)
chr4 (429-474)||(41139497-41139542)


Alignment Details
Target: chr6 (Bit Score: 481; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 563
Target Start/End: Complemental strand, 6474756 - 6474201
Alignment:
Q  8 gaagggtcacaaattttgaacgattatatatatattttctatagttctgtttatttgtttcattaaaattcaaatgtagttcctaagaaagataattatt 107  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6474756 gaagggtcacaaattttgaacgattatatat----tttctatagttctgtttatttgtttcattaaaattcaaatgtagttcctaagaaagataattatt 6474661  T
Q  108 atatttgctcctaaaatgctagaaaagcagtggtaaaatgttacagcccttgtatttttggtttggtagatgactagacctttatttactaataatagac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6474660 atatttgctcctaaaatgctagaaaagcagtggtaaaatgttacagcccttgtatttttggtttggtagatgactagacctttatttactaataatagac 6474561  T
Q  208 agtatcaaaaggaacaagcataagatcatgagattaaagtagacaatctgattaagctgttttcatacactaatcttcttagaacttgctta---tatta 304  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||    
T  6474560 agtatcaaaaggaacaagcataagatcatgagatcaaagtagacaatctgattaagctgttttcatacactaatcttcttagaacttacttatattatta 6474461  T
Q  305 aattagaagttgttggagctaagtacattaaggaactttaaagtaatgctgtttaatttagagtgccttctaagatagaaatttggaaagtgaaagctcg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  6474460 aattagaagttgttggagctaagtacattaaggaactttaaagtaatgctgtttaatttagagtgccttgtaagatagaaatttggaaagtgaaagctag 6474361  T
Q  405 aaaaatcattatgcattatactttaccttaaagtattcgaattccctcaaagc----attacattacctcaaagtatttgaaaaagtctttttcttttaa 500  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||||||||||||    
T  6474360 aaaaatcattatgcatta---tttaccttaaagtattcgaattccctcaaaacattaattacattacctcaaagtatttgaaaaagtctttttcttttaa 6474264  T
Q  501 cctttgataacacgcttaaagtttttctaagtcataaaccttcaaactttagaggttaatttt 563  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6474263 cctttgataacacgcttaaagtttttctaagtcataaaccttcaaactttagaggttaatttt 6474201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 623 - 850
Target Start/End: Complemental strand, 6474140 - 6473913
Alignment:
Q  623 catataataaattcataagtctacacaacagactttatttacagagaaattgttaacagaaatagctataatgcaagaattatcacaagttcataactta 722  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6474140 catataataaattcataagtctacacaacagactttatttacagagaaattgttaacagaaatagctataatgcaagaattattacaagttcataactta 6474041  T
Q  723 ttttatttttaatgttttatttgaaatcataaacaattnnnnnnnttcctactctttatcacttctgctaagaatccaccataagagattagtcaatgaa 822  Q
    |||||||||||||||||||||||||||||||||||||         | |||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  6474040 ttttatttttaatgttttatttgaaatcataaacaataaaaaaaaattctacactttatcacttctgctatgaatccaccataagagattagtcaatgaa 6473941  T
Q  823 tttccatcatcaaatctattcaaacttt 850  Q
    ||||||||||||||||||||||||||||    
T  6473940 tttccatcatcaaatctattcaaacttt 6473913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 6463538 - 6463630
Alignment:
Q  40 tattttctatagttctgtttatttgtttcattaaaattcaaatgtagttcctaagaaagataattattatatttgctcctaaaatgctagaaaa 133  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||  |||| | |||| ||||| |||||| |||||||| |||||||||||||    
T  6463538 tattttctatagttttgtttatttgtttcattaaaattaaaatgtgattccaaggaaatataataattatacttgctcct-aaatgctagaaaa 6463630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 794 - 845
Target Start/End: Original strand, 6464585 - 6464636
Alignment:
Q  794 gaatccaccataagagattagtcaatgaatttccatcatcaaatctattcaa 845  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  6464585 gaatccaccataagagattagtcaatgagtttccatcatcaaaaccattcaa 6464636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 630 - 680
Target Start/End: Complemental strand, 13036238 - 13036188
Alignment:
Q  630 taaattcataagtctacacaacagactttatttacagagaaattgttaaca 680  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  13036238 taaattcacaagtctacacaacacactttatttacatagaaattgttaaca 13036188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 795 - 838
Target Start/End: Original strand, 6495926 - 6495969
Alignment:
Q  795 aatccaccataagagattagtcaatgaatttccatcatcaaatc 838  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    
T  6495926 aatccaccacaagagattagtcaatgagtttccatcatcaaatc 6495969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 796 - 836
Target Start/End: Original strand, 6525625 - 6525665
Alignment:
Q  796 atccaccataagagattagtcaatgaatttccatcatcaaa 836  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  6525625 atccaccataatagattagtcaatgagtttccatcatcaaa 6525665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 795 - 838
Target Start/End: Complemental strand, 6462746 - 6462703
Alignment:
Q  795 aatccaccataagagattagtcaatgaatttccatcatcaaatc 838  Q
    ||||||||| || |||||||||||||| ||||||||||||||||    
T  6462746 aatccaccacaaaagattagtcaatgagtttccatcatcaaatc 6462703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 8982795 - 8982853
Alignment:
Q  361 tttagagtgccttctaagatagaaatttggaaagtgaaagctcgaaaaatcattatgca 419  Q
    |||| ||||| || ||||||||||||||||||||||||||   ||||||||||||||||    
T  8982795 tttatagtgctttgtaagatagaaatttggaaagtgaaagagagaaaaatcattatgca 8982853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 47165216 - 47165260
Alignment:
Q  429 accttaaagtattcgaattccctcaaagcattacattacctcaaa 473  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||||    
T  47165216 accttaaagtatttgaattccctcaaaacattacatttcctcaaa 47165260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 473
Target Start/End: Original strand, 31189397 - 31189444
Alignment:
Q  426 tttaccttaaagtattcgaattccctcaaagcattacattacctcaaa 473  Q
    ||||||| |||||||| |||||| |||||| |||||||||||||||||    
T  31189397 tttacctcaaagtatttgaattctctcaaaacattacattacctcaaa 31189444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 5415852 - 5415803
Alignment:
Q  429 accttaaagtattcgaattccctcaaagcattacattacctcaaagtatt 478  Q
    ||||||||||| | ||||||||||||| ||||||||| ||||||| ||||    
T  5415852 accttaaagtagttgaattccctcaaaacattacattccctcaaaatatt 5415803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 8255092 - 8255047
Alignment:
Q  433 taaagtattcgaattccctcaaagcattacattacctcaaagtatt 478  Q
    |||| |||| ||||||||||||| ||||||||||||| ||||||||    
T  8255092 taaaatatttgaattccctcaaaacattacattaccttaaagtatt 8255047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 37722895 - 37722944
Alignment:
Q  429 accttaaagtattcgaattccctcaaagcattacattacctcaaagtatt 478  Q
    |||| |||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  37722895 acctcaaagtatttgaattccctcaaaacattacattccctcaaaatatt 37722944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 41139542 - 41139497
Alignment:
Q  429 accttaaagtattcgaattccctcaaagcattacattacctcaaag 474  Q
    |||| |||||||| ||||| ||||||| ||||||||||||||||||    
T  41139542 acctaaaagtatttgaatttcctcaaaacattacattacctcaaag 41139497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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