View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4659-Insertion-5 (Length: 762)

Name: NF4659-Insertion-5
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4659-Insertion-5
NF4659-Insertion-5
[»] chr3 (17 HSPs)
chr3 (7-381)||(53945088-53945458)
chr3 (616-761)||(19548830-19548970)
chr3 (444-558)||(19549028-19549142)
chr3 (649-756)||(17699918-17700025)
chr3 (625-755)||(52251476-52251605)
chr3 (379-434)||(53945067-53945122)
chr3 (653-758)||(48929413-48929518)
chr3 (616-749)||(30616963-30617095)
chr3 (656-755)||(6824510-6824609)
chr3 (646-755)||(40279512-40279621)
chr3 (657-755)||(9109582-9109680)
chr3 (646-755)||(16673237-16673346)
chr3 (444-554)||(17699713-17699824)
chr3 (451-547)||(53656274-53656372)
chr3 (490-547)||(52251676-52251733)
chr3 (624-687)||(53656447-53656509)
chr3 (443-473)||(16673517-16673547)
[»] chr7 (8 HSPs)
chr7 (624-761)||(25019662-25019798)
chr7 (444-558)||(25019864-25019978)
chr7 (648-756)||(41806105-41806213)
chr7 (649-761)||(30573688-30573800)
chr7 (444-554)||(41806306-41806417)
chr7 (619-729)||(28042838-28042947)
chr7 (647-759)||(3354033-3354145)
chr7 (444-554)||(30573894-30574004)
[»] chr6 (5 HSPs)
chr6 (616-761)||(6995326-6995470)
chr6 (619-755)||(31483059-31483194)
chr6 (451-547)||(31482892-31482988)
chr6 (444-558)||(6995528-6995642)
chr6 (653-758)||(34434026-34434131)
[»] chr2 (8 HSPs)
chr2 (624-761)||(10688221-10688357)
chr2 (616-759)||(26145871-26146013)
chr2 (616-759)||(43309911-43310053)
chr2 (450-530)||(10687860-10687940)
chr2 (649-756)||(20893834-20893941)
chr2 (653-755)||(43724492-43724594)
chr2 (443-558)||(26145693-26145813)
chr2 (522-558)||(10688119-10688155)
[»] chr4 (9 HSPs)
chr4 (616-759)||(48117019-48117161)
chr4 (651-756)||(30822088-30822193)
chr4 (451-547)||(47094629-47094725)
chr4 (443-554)||(30822289-30822401)
chr4 (444-534)||(36952904-36952994)
chr4 (444-534)||(48116839-48116933)
chr4 (624-759)||(38295406-38295540)
chr4 (443-473)||(3873071-3873101)
chr4 (443-473)||(26708015-26708045)
[»] chr8 (13 HSPs)
chr8 (616-759)||(30426089-30426231)
chr8 (443-558)||(5803417-5803532)
chr8 (447-559)||(30425915-30426032)
chr8 (649-756)||(12331538-12331645)
chr8 (451-547)||(35028708-35028804)
chr8 (619-755)||(35028875-35029010)
chr8 (646-755)||(195009-195118)
chr8 (646-755)||(309846-309955)
chr8 (653-758)||(5971413-5971518)
chr8 (651-753)||(38140724-38140826)
chr8 (646-755)||(14023094-14023203)
chr8 (646-720)||(36492060-36492134)
chr8 (664-752)||(2180518-2180606)
[»] scaffold0003 (2 HSPs)
scaffold0003 (649-756)||(366580-366687)
scaffold0003 (445-554)||(366376-366486)
[»] chr1 (7 HSPs)
chr1 (616-759)||(36685494-36685636)
chr1 (444-554)||(11866912-11867022)
chr1 (443-558)||(36685316-36685436)
chr1 (444-554)||(27527883-27527994)
chr1 (646-755)||(14863369-14863478)
chr1 (653-758)||(45269927-45270032)
chr1 (653-729)||(41149818-41149894)
[»] chr5 (11 HSPs)
chr5 (624-755)||(21076782-21076912)
chr5 (650-756)||(9725032-9725138)
chr5 (646-755)||(41589776-41589885)
chr5 (644-755)||(18693012-18693123)
chr5 (451-547)||(2249866-2249962)
chr5 (653-755)||(26413339-26413441)
chr5 (646-755)||(4298661-4298770)
chr5 (653-758)||(25671638-25671743)
chr5 (646-755)||(29152977-29153086)
chr5 (444-554)||(9725233-9725342)
chr5 (444-473)||(40955324-40955353)
[»] scaffold0061 (2 HSPs)
scaffold0061 (444-558)||(65143-65257)
scaffold0061 (704-755)||(64991-65042)
[»] scaffold0017 (2 HSPs)
scaffold0017 (444-558)||(133375-133489)
scaffold0017 (704-755)||(133590-133641)
[»] scaffold0070 (1 HSPs)
scaffold0070 (646-755)||(26328-26437)
[»] scaffold0190 (1 HSPs)
scaffold0190 (624-755)||(3953-4083)
[»] scaffold0562 (1 HSPs)
scaffold0562 (443-473)||(3890-3920)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 381
Target Start/End: Complemental strand, 53945458 - 53945088
Alignment:
Q  7 atcctcaatggtaaaatacattccgattcatgacgcaacgtaacacatatacttccacttaaaaaagataaattataagccaaaaatcacgatattaaat 106  Q
    ||||||| | ||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||    
T  53945458 atcctcagtagtaaaatacattttgattcatgacgcaaccgaacacatatacttccacttaaaaaagataaattacaagccaaaaatcacaatcttaaat 53945359  T
Q  107 ataatactataaatcttaagatcgtgatttttagcttgtaatttctcttttttatatctctttttactcatgtttatcatgtaactttatattcatccac 206  Q
    ||||||   ||||| ||||||| || ||||||  ||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  53945358 ataata---taaattttaagatggtaatttttgacttatagtttctcttttttatatctctttttactcatgtttatcatataactttatattcatccac 53945262  T
Q  207 tnnnnnnnnnnnngatgttacgt-acgttgaagatcatagatcatgtgtatcacttccttcttggattgacacttgtatttattgttcttcaaacaacat 305  Q
    |             ||| |  || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53945261 tcaaaaaaaataaaatgat--gtcacgttgaagatcatagatcatgtgtatcacttccttcttggattggcacttgtatttattgttcttcaaacaacat 53945164  T
Q  306 tatcacaacaaaaacactaagtacatgttttctaccgtggctttgtcgaaatcacatcaaacaactattggaattt 381  Q
    ||||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53945163 tatcacagcaaaaacaccgagtacatgttttctaccgtgactttgtcgaaatcacatcaaacaactattggaattt 53945088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 616 - 761
Target Start/End: Complemental strand, 19548970 - 19548830
Alignment:
Q  616 ttattagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtca 715  Q
    ||||||| |||||||||||||||||  |     ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19548970 ttattagcttttagccaccaaagggacg-----ctttactttattcagcaactgatcaatggagctacctgtattgttaaacaacctttgattacggtca 19548876  T
Q  716 ttccaagtgatccacacagtaagcaaccaaacaagctgcaaaaagg 761  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||    
T  19548875 ttccaaatgatccacacagtaaccaaccaaacaagctgcaaaaagg 19548830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 444 - 558
Target Start/End: Complemental strand, 19549142 - 19549028
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaac 543  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||| || ||||||||||||||||||| ||||||||    
T  19549142 aacaataaaaaatggaacttatattaacaaaccacggacacctccaagtacaagatgtaccaaggaggccccaagtatttacaaatatacatggtcaaac 19549043  T
Q  544 aaaaattagccaagt 558  Q
    |||||||||||||||    
T  19549042 aaaaattagccaagt 19549028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 649 - 756
Target Start/End: Original strand, 17699918 - 17700025
Alignment:
Q  649 ctttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaaca 748  Q
    |||||||||||||||||  ||||||||  ||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  17699918 ctttactttatccagcatgtgatcaatagagctacctgtattattaaacaacctctgattacggtcattccaaatgattcacacagtaagcaaccaaaca 17700017  T
Q  749 agctgcaa 756  Q
    ||||||||    
T  17700018 agctgcaa 17700025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 625 - 755
Target Start/End: Complemental strand, 52251605 - 52251476
Alignment:
Q  625 tttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtg 724  Q
    |||||||||||||||| | |||| ||| ||| |||||| ||||||||||||| ||||||||||  | || ||||| |||||||| |||||||||||| ||    
T  52251605 tttagccaccaaagggaa-taccgcttaactctatccaacaactgatcaatggagctacctgtgctattgaacaatctttgattccggtcattccaaatg 52251507  T
Q  725 atccacacagtaagcaaccaaacaagctgca 755  Q
    ||||||||| |||||| ||||||||||||||    
T  52251506 atccacacactaagcagccaaacaagctgca 52251476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 53945122 - 53945067
Alignment:
Q  379 tttgtcgaaatcacatcaaacaactattggaatttatggattaaccttagtcaata 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53945122 tttgtcgaaatcacatcaaacaactattggaatttatggattaaccttagtcaata 53945067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 653 - 758
Target Start/End: Original strand, 48929413 - 48929518
Alignment:
Q  653 actttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaagct 752  Q
    |||||||||| ||||||||||||| | |||||| ||||  |||||||||||||||| || ||||||||| |||||||| ||  ||| |||||||||||||    
T  48929413 actttatccaacaactgatcaatggaactacctatattagtaaacaacctttgattccgatcattccaaatgatccacgcacaaagtaaccaaacaagct 48929512  T
Q  753 gcaaaa 758  Q
    ||||||    
T  48929513 gcaaaa 48929518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 616 - 749
Target Start/End: Complemental strand, 30617095 - 30616963
Alignment:
Q  616 ttattagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtca 715  Q
    ||||||| ||||||||||||||| | | || |||||||||||||| | ||||||||| ||| | || ||| |||| |||||||||||||||||||||| |    
T  30617095 ttattagcttttagccaccaaagagaa-tatcactttactttatctaacaactgatctatggaacttcctatattattaaacaacctttgattacggtta 30616997  T
Q  716 ttccaagtgatccacacagtaagcaaccaaacaa 749  Q
    || ||  |||||||| ||  ||||||||||||||    
T  30616996 tttcatatgatccacgcacaaagcaaccaaacaa 30616963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 656 - 755
Target Start/End: Original strand, 6824510 - 6824609
Alignment:
Q  656 ttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaagctgca 755  Q
    ||||||| ||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||  | |||||| ||  ||||||||| ||||||||||    
T  6824510 ttatccaacaactgatcaatggaactacctacattattaaacaacctttgattacggtcattccatataatccacgcacaaagcaaccagacaagctgca 6824609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 646 - 755
Target Start/End: Complemental strand, 40279621 - 40279512
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaa 745  Q
    |||||| |||||||||| ||||||||||||| | ||||||  ||| ||||||| |||||||||||||||||||||  | |||||| ||  ||||||| |     
T  40279621 ccacttgactttatccaacaactgatcaatggaactacctacattattaaacagcctttgattacggtcattccatataatccacgcacaaagcaactag 40279522  T
Q  746 acaagctgca 755  Q
    ||||||||||    
T  40279521 acaagctgca 40279512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 657 - 755
Target Start/End: Complemental strand, 9109680 - 9109582
Alignment:
Q  657 tatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaagctgca 755  Q
    |||||| || |||||||||| | ||||||  ||| |||||||  ||||||||||||||||||||  |||||||| ||  ||||||||||||||||||||    
T  9109680 tatccaacagctgatcaatggaactacctacattattaaacagtctttgattacggtcattccatatgatccacgcacaaagcaaccaaacaagctgca 9109582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 646 - 755
Target Start/End: Complemental strand, 16673346 - 16673237
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaa 745  Q
    |||||| || ||||||| ||||||||||||| | ||||||  ||  ||||||||||||||||||| |||||||||  | |||||| ||  |||||||||     
T  16673346 ccacttgaccttatccaacaactgatcaatggaactacctacatcattaaacaacctttgattacagtcattccatataatccacgcacaaagcaaccag 16673247  T
Q  746 acaagctgca 755  Q
    ||||||||||    
T  16673246 acaagctgca 16673237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 554
Target Start/End: Original strand, 17699713 - 17699824
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatg-aggtccaaagtatttacaaatatacagggtcaaa 542  Q
    ||||||||||||||||||||||||||||||| ||    ||||| | ||| ||||||||||||  | || || ||||||||||||||||||||    ||||    
T  17699713 aacaataaaaaatggaacttatattaacaaaccacgagcaccttccagtgcaagatgtaccagggaagctcaaaagtatttacaaatatacataaacaaa 17699812  T
Q  543 caaaaattagcc 554  Q
    ||||||||||||    
T  17699813 caaaaattagcc 17699824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 451 - 547
Target Start/End: Original strand, 53656274 - 53656372
Alignment:
Q  451 aaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagta--tttacaaatatacagggtcaaacaaaa 547  Q
    ||||||||||| |||||||||||||||   || | ||| |||||||||||||||||  | ||||||||||  ||||||||||||||| | |||||||||    
T  53656274 aaaaatggaacatatattaacaaatcacgaactcttcctagtacaagatgtaccaagaaagtccaaagtatttttacaaatatacagagacaaacaaaa 53656372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 52251733 - 52251676
Alignment:
Q  490 agtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaacaaaa 547  Q
    ||||||||||||| |||  | ||||||||||||||||||||||||| |||||||||||    
T  52251733 agtacaagatgtatcaagaaagtccaaagtatttacaaatatacagagtcaaacaaaa 52251676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 687
Target Start/End: Original strand, 53656447 - 53656509
Alignment:
Q  624 ttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgt 687  Q
    ||||||||||||||||| | |||| ||| ||| |||||| ||||||||||||| ||||||||||    
T  53656447 ttttagccaccaaagggaa-taccgcttaactctatccaacaactgatcaatggagctacctgt 53656509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 443 - 473
Target Start/End: Complemental strand, 16673547 - 16673517
Alignment:
Q  443 gaacaataaaaaatggaacttatattaacaa 473  Q
    |||||||||||||||||||||||||||||||    
T  16673547 gaacaataaaaaatggaacttatattaacaa 16673517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 7e-48; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 624 - 761
Target Start/End: Complemental strand, 25019798 - 25019662
Alignment:
Q  624 ttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagt 723  Q
    ||||||||||||||| | ||| || |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  25019798 ttttagccaccaaagag-agttcccctttactttatccatcaactgatcaatggagctacctgtattgttaaacaacctttgattacggtcattccaaat 25019700  T
Q  724 gatccacacagtaagcaaccaaacaagctgcaaaaagg 761  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  25019699 gatccacacggtaagcaaccaaacaagctacaaaaagg 25019662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 444 - 558
Target Start/End: Complemental strand, 25019978 - 25019864
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaac 543  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  25019978 aacaataaaaaatggaacttatattaacaaaccacggacacctccaagtacaagatgtaccaaggaggcccaaagtatttacaaatatacagagtcaaac 25019879  T
Q  544 aaaaattagccaagt 558  Q
    |||||||||||||||    
T  25019878 aaaaattagccaagt 25019864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 648 - 756
Target Start/End: Complemental strand, 41806213 - 41806105
Alignment:
Q  648 actttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaac 747  Q
    ||||||||||||||| || |||||||||  |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  41806213 actttactttatccatcatctgatcaatagagctacttgtattgttaaacaaccattgattacggtcattccaaatgatccacacagtaagcaaccaaac 41806114  T
Q  748 aagctgcaa 756  Q
    |||||||||    
T  41806113 aagctgcaa 41806105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 649 - 761
Target Start/End: Complemental strand, 30573800 - 30573688
Alignment:
Q  649 ctttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaaca 748  Q
    |||||||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||| ||    
T  30573800 ctttactttatccatcaactgatcaatagagctacatgtattgttaaacaacctttgattacgatcattccaaatgagccacacagtaaccaaccaacca 30573701  T
Q  749 agctgcaaaaagg 761  Q
    |||||||| ||||    
T  30573700 agctgcaagaagg 30573688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 444 - 554
Target Start/End: Complemental strand, 41806417 - 41806306
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgagg-tccaaagtatttacaaatatacagggtcaaa 542  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||  |||| || ||||||||||||||||||||  ||||||    
T  41806417 aacaataaaaaatggaacttatattaacaaaccacggacacctccaagtacaagatgtatcagggaggctcaaaagtatttacaaatatacatagtcaaa 41806318  T
Q  543 caaaaattagcc 554  Q
    ||||||||||||    
T  41806317 caaaaattagcc 41806306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 619 - 729
Target Start/End: Complemental strand, 28042947 - 28042838
Alignment:
Q  619 ttagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattc 718  Q
    |||| ||||||||||||||  | |||||| |||||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||    
T  28042947 ttagcttttagccaccaaaaag-agtaccgctttactttatccaacaactgatcgatggagctacctatattgttaaacaacctttgattacggtcagtc 28042849  T
Q  719 caagtgatcca 729  Q
    ||| |||||||    
T  28042848 caaatgatcca 28042838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 647 - 759
Target Start/End: Complemental strand, 3354145 - 3354033
Alignment:
Q  647 cactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaa 746  Q
    ||||| |||||||||| ||||||||||||| | |||||| ||||  ||||||||||||| ||||||||||| ||| | |||||| ||  ||| ||| |||    
T  3354145 cacttcactttatccaacaactgatcaatggaactacctatattagtaaacaacctttggttacggtcattgcaaataatccacgcacaaagtaactaaa 3354046  T
Q  747 caagctgcaaaaa 759  Q
    |||||||||||||    
T  3354045 caagctgcaaaaa 3354033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 444 - 554
Target Start/End: Complemental strand, 30574004 - 30573894
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaac 543  Q
    |||||||||||||| |||||||||||||||| ||  | |||||||||||||||||||||  |   |||  || | ||||||||||||||||  |||||||    
T  30574004 aacaataaaaaatgaaacttatattaacaaaccacgggcacctccaagtacaagatgtattaggaaggctcataatatttacaaatatacaaagtcaaac 30573905  T
Q  544 aaaaattagcc 554  Q
    |||||||||||    
T  30573904 aaaaattagcc 30573894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 616 - 761
Target Start/End: Complemental strand, 6995470 - 6995326
Alignment:
Q  616 ttattagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtca 715  Q
    ||||||| ||||||||||||||||| ||||||  ||||||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  6995470 ttattagcttttagccaccaaaggg-agtaccgttttactttatccaacaattgatcaatggagctacctgtattgttaaacaacatttgattacggtca 6995372  T
Q  716 ttccaagtgatccacacagtaagcaaccaaacaagctgcaaaaagg 761  Q
     ||||| ||||||||||| ||||||||||||||||| |||||||||    
T  6995371 atccaaatgatccacacactaagcaaccaaacaagcagcaaaaagg 6995326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 619 - 755
Target Start/End: Original strand, 31483059 - 31483194
Alignment:
Q  619 ttagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattc 718  Q
    |||| ||||||||||||||||| | |||| ||| ||| |||||| ||||||||||||| ||||||||||  | || ||||| |||||||| | |||||||    
T  31483059 ttagcttttagccaccaaagggaa-taccgcttaactctatccaacaactgatcaatggagctacctgtgctattgaacaatctttgattccagtcattc 31483157  T
Q  719 caagtgatccacacagtaagcaaccaaacaagctgca 755  Q
    ||| ||||||||||| |||||||||||||||||||||    
T  31483158 caaatgatccacacactaagcaaccaaacaagctgca 31483194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 547
Target Start/End: Original strand, 31482892 - 31482988
Alignment:
Q  451 aaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaacaaaa 547  Q
    |||||||||||||||||||||||||||   || | |||  ||||||||||||||||  | |||||| ||||||||||||||||||||||||| ||||    
T  31482892 aaaaatggaacttatattaacaaatcacgaactcttcctggtacaagatgtaccaagaaagtccaacgtatttacaaatatacagggtcaaataaaa 31482988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 444 - 558
Target Start/End: Complemental strand, 6995642 - 6995528
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaac 543  Q
    |||||| ||||||  ||||||||||||||||  |  |||||||| ||||| ||||||||| ||  ||| || |||||||||||||||||||| |||||      
T  6995642 aacaatcaaaaataaaacttatattaacaaactacggacacctctaagtataagatgtactaaataggccccaagtatttacaaatatacagagtcaata 6995543  T
Q  544 aaaaattagccaagt 558  Q
    |||||||||| ||||    
T  6995542 aaaaattagcgaagt 6995528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 653 - 758
Target Start/End: Original strand, 34434026 - 34434131
Alignment:
Q  653 actttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaagct 752  Q
    |||||||||| ||||||||||||| | |||||| ||||   |||||||||||||||   |||||||||| |||| ||| ||  ||| |||||||| | ||    
T  34434026 actttatccaacaactgatcaatggaactacctatattagaaaacaacctttgattcatgtcattccaaatgattcacgcacaaagtaaccaaactaact 34434125  T
Q  753 gcaaaa 758  Q
    ||||||    
T  34434126 gcaaaa 34434131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 2e-45; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 624 - 761
Target Start/End: Original strand, 10688221 - 10688357
Alignment:
Q  624 ttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagt 723  Q
    ||||||||||||||| | ||| || |||||||||||||| ||||||||||||| |||||| |||||| |||||||||||||||||||| ||||||||| |    
T  10688221 ttttagccaccaaagag-agttccgctttactttatccatcaactgatcaatggagctacatgtattattaaacaacctttgattacgatcattccaaat 10688319  T
Q  724 gatccacacagtaagcaaccaaacaagctgcaaaaagg 761  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10688320 gatccacacagtaagcaaccaaacaagctgcaaaaagg 10688357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 616 - 759
Target Start/End: Original strand, 26145871 - 26146013
Alignment:
Q  616 ttattagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtca 715  Q
    ||||||| ||||||||||||||||| |||||| ||| ||||| |||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||    
T  26145871 ttattagcttttagccaccaaaggg-agtaccgcttgactttgtccagcaactgatcaatggagctacctatattgttgaacaatctttgattacggtca 26145969  T
Q  716 ttccaagtgatccacacagtaagcaaccaaacaagctgcaaaaa 759  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||    
T  26145970 ttccaaatgatccgcacagtaagcaaccaaataagctgcaaaaa 26146013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 616 - 759
Target Start/End: Original strand, 43309911 - 43310053
Alignment:
Q  616 ttattagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtca 715  Q
    ||||||| ||||||||||||||||| |||||| ||  |||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  43309911 ttattagcttttagccaccaaaggg-agtaccgctcgactttatccaacaactgatcaatggagctacatgtattgttgaacaacctttgattacggtca 43310009  T
Q  716 ttccaagtgatccacacagtaagcaaccaaacaagctgcaaaaa 759  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||    
T  43310010 ttccaaatgatccacacactaagcaaccaaagaagctgcaaaaa 43310053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 450 - 530
Target Start/End: Original strand, 10687860 - 10687940
Alignment:
Q  450 aaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaata 530  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  10687860 aaaaaatggaacttatattaacaaaccacggacacctccaagtacaagatgtaccaatgatgcccaaagtatttacaaata 10687940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 649 - 756
Target Start/End: Original strand, 20893834 - 20893941
Alignment:
Q  649 ctttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaaca 748  Q
    |||||||||||||| ||  ||||||||  ||||||| || || ||||||||||| |||||  ||||||||||| ||||||||||||||||||||||||||    
T  20893834 ctttactttatccatcatgtgatcaatagagctaccggtgttattaaacaacctctgattgtggtcattccaaatgatccacacagtaagcaaccaaaca 20893933  T
Q  749 agctgcaa 756  Q
    ||||||||    
T  20893934 agctgcaa 20893941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 653 - 755
Target Start/End: Complemental strand, 43724594 - 43724492
Alignment:
Q  653 actttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaagct 752  Q
    |||||||||| ||||| ||||||| | |||||| |||| ||||||||||||||||||| |||||||||| |||||||| ||  |||||||||||||||||    
T  43724594 actttatccaacaactaatcaatggaactacctatattattaaacaacctttgattacagtcattccaaatgatccacgcacaaagcaaccaaacaagct 43724495  T
Q  753 gca 755  Q
    |||    
T  43724494 gca 43724492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 443 - 558
Target Start/End: Original strand, 26145693 - 26145813
Alignment:
Q  443 gaacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaa- 541  Q
    ||||||||||||||| |||||||||||||||| ||  ||||||||||||||||| || ||| || || | ||||||||||||||||||||||  |||||     
T  26145693 gaacaataaaaaatgtaacttatattaacaaaacacggacacctccaagtacaacatttactaaggaagcccaaagtatttacaaatatacaaagtcaat 26145792  T
Q  542 ----acaaaaattagccaagt 558  Q
        |||||||||||||||||    
T  26145793 caagacaaaaattagccaagt 26145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 558
Target Start/End: Original strand, 10688119 - 10688155
Alignment:
Q  522 ttacaaatatacagggtcaaacaaaaattagccaagt 558  Q
    |||||||||||||| ||||||||||||||||||||||    
T  10688119 ttacaaatatacagagtcaaacaaaaattagccaagt 10688155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 3e-44; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 616 - 759
Target Start/End: Original strand, 48117019 - 48117161
Alignment:
Q  616 ttattagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtca 715  Q
    ||||||| ||||||||||||||||| | |||| ||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||    
T  48117019 ttattagcttttagccaccaaagggaa-taccgcttgactttgtccagcaactgatcaatggagctacctgtattgttgaacaacctttgactacggtca 48117117  T
Q  716 ttccaagtgatccacacagtaagcaaccaaacaagctgcaaaaa 759  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||    
T  48117118 ttccaaatgatccacacactaagcaaccaaagaagctgcaaaaa 48117161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 651 - 756
Target Start/End: Complemental strand, 30822193 - 30822088
Alignment:
Q  651 ttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaag 750  Q
    |||||||||||||||  ||||||||  ||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  30822193 ttactttatccagcatgtgatcaatagagctacctgtattattaaacaacctctgattacggtcattcaaaatgatccacacagtaagcaaccaaacaag 30822094  T
Q  751 ctgcaa 756  Q
    ||||||    
T  30822093 ctgcaa 30822088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 451 - 547
Target Start/End: Complemental strand, 47094725 - 47094629
Alignment:
Q  451 aaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaacaaaa 547  Q
    |||||||||||||||||||||||||||   || | ||| |||||||||||||| ||  | ||||||||||||||||||||||||| |||||||||||    
T  47094725 aaaaatggaacttatattaacaaatcacgaactcttcctagtacaagatgtactaagaatgtccaaagtatttacaaatatacagagtcaaacaaaa 47094629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 443 - 554
Target Start/End: Complemental strand, 30822401 - 30822289
Alignment:
Q  443 gaacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatg-aggtccaaagtatttacaaatatacagggtcaa 541  Q
    ||||||| |||||||||||||||||||||||| ||  | ||||||| ||||||||||||||||  | || || ||||||||||||||||||||    |||    
T  30822401 gaacaatcaaaaatggaacttatattaacaaaccacgggcacctccgagtacaagatgtaccagggaagctcaaaagtatttacaaatatacataaacaa 30822302  T
Q  542 acaaaaattagcc 554  Q
    |||||||||||||    
T  30822301 acaaaaattagcc 30822289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 444 - 534
Target Start/End: Original strand, 36952904 - 36952994
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatataca 534  Q
    ||||||||||||||||| ||||||||||||| ||  |||||||| ||||| ||||| || ||| || | ||||||||||||||||||||||    
T  36952904 aacaataaaaaatggaatttatattaacaaaacacggacacctctaagtataagatatatcaaggaagcccaaagtatttacaaatataca 36952994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 444 - 534
Target Start/End: Original strand, 48116839 - 48116933
Alignment:
Q  444 aacaataaaaaatggaacttata----ttaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatataca 534  Q
    |||||| ||||||||||||||||    |||||||| ||  ||||||||||||||||||||||| ||| || | ||||||||||||||||||||||    
T  48116839 aacaatcaaaaatggaacttatatatattaacaaaacacggacacctccaagtacaagatgtatcaaggaagcccaaagtatttacaaatataca 48116933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 624 - 759
Target Start/End: Original strand, 38295406 - 38295540
Alignment:
Q  624 ttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagt 723  Q
    ||||||||||||||| | ||| || |||||||||||| |  |||||||| ||| | |||  |||||||||||||||||| |||||||| ||||||||  |    
T  38295406 ttttagccaccaaagag-agtgccgctttactttatctaataactgatctatggaactagttgtattgttaaacaacctatgattacgatcattccatat 38295504  T
Q  724 gatccacacagtaagcaaccaaacaagctgcaaaaa 759  Q
    |||||||  |  || ||||| |||||||||||||||    
T  38295505 gatccacgtaaaaaacaaccgaacaagctgcaaaaa 38295540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 443 - 473
Target Start/End: Complemental strand, 3873101 - 3873071
Alignment:
Q  443 gaacaataaaaaatggaacttatattaacaa 473  Q
    |||||||||||||||||||||||||||||||    
T  3873101 gaacaataaaaaatggaacttatattaacaa 3873071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 443 - 473
Target Start/End: Original strand, 26708015 - 26708045
Alignment:
Q  443 gaacaataaaaaatggaacttatattaacaa 473  Q
    |||||||||||||||||||||||||||||||    
T  26708015 gaacaataaaaaatggaacttatattaacaa 26708045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 7e-42; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 616 - 759
Target Start/End: Original strand, 30426089 - 30426231
Alignment:
Q  616 ttattagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtca 715  Q
    ||||||| ||||||||||||||| || ||||| ||| ||||| |||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||    
T  30426089 ttattagcttttagccaccaaagagg-gtaccgcttgactttgtccagcaactgatcaatggagctatctgtattgttgaacaacatttgattacggtca 30426187  T
Q  716 ttccaagtgatccacacagtaagcaaccaaacaagctgcaaaaa 759  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||    
T  30426188 ttccaaatgatccacacactaagcaaccaaagaagctgcaaaaa 30426231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 443 - 558
Target Start/End: Complemental strand, 5803532 - 5803417
Alignment:
Q  443 gaacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaa 542  Q
    ||||||| |||||||||| | ||||||||||| || |||||||||||||||||||||||||||| |||| || ||| |||||||||||||||  ||||||    
T  5803532 gaacaatcaaaaatggaaataatattaacaaaccacagacacctccaagtacaagatgtaccaaggaggccccaagcatttacaaatatacaaagtcaaa 5803433  T
Q  543 caaaaattagccaagt 558  Q
    ||||||||||||||||    
T  5803432 caaaaattagccaagt 5803417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 447 - 559
Target Start/End: Original strand, 30425915 - 30426032
Alignment:
Q  447 aataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaa----- 541  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || || | ||||||||||||||||||||||  |||||         
T  30425915 aataaaaaatggaacttatattaacaaaacacagacacctccaagtacaagatgtactaaggaagcccaaagtatttacaaatatacaaagtcaatcaag 30426014  T
Q  542 acaaaaattagccaagtt 559  Q
    ||||||||||||||||||    
T  30426015 acaaaaattagccaagtt 30426032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 649 - 756
Target Start/End: Original strand, 12331538 - 12331645
Alignment:
Q  649 ctttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaaca 748  Q
    |||||||||||||| ||  ||||||||  ||||||| || || ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    
T  12331538 ctttactttatccatcatgtgatcaatagagctaccggtgttattaaacaacctctgattgcggtcattccaaatgatccacacagtaagcaaccaaaca 12331637  T
Q  749 agctgcaa 756  Q
    ||||||||    
T  12331638 agctgcaa 12331645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 451 - 547
Target Start/End: Original strand, 35028708 - 35028804
Alignment:
Q  451 aaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaacaaaa 547  Q
    |||||||||||||||||||||||||||   || | ||| |||||||||||||||||  | ||||||||||||||||||||||||||||||| |||||    
T  35028708 aaaaatggaacttatattaacaaatcacgaactcttcctagtacaagatgtaccaagaaagtccaaagtatttacaaatatacagggtcaagcaaaa 35028804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 619 - 755
Target Start/End: Original strand, 35028875 - 35029010
Alignment:
Q  619 ttagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattc 718  Q
    |||| ||||||||||||||||| | |||| ||| ||| |||||| ||||||||||||| ||||||||||  | || ||||| |||||||| || ||||||    
T  35028875 ttagcttttagccaccaaagggaa-taccgcttaactctatccaacaactgatcaatggagctacctgtgctattgaacaatctttgattccgatcattc 35028973  T
Q  719 caagtgatccacacagtaagcaaccaaacaagctgca 755  Q
    ||| || |||||||| ||||||||||||| |||||||    
T  35028974 caaatggtccacacactaagcaaccaaaccagctgca 35029010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 646 - 755
Target Start/End: Original strand, 195009 - 195118
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaa 745  Q
    |||||| || ||||||| ||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||  | |||||| ||  |||||||||     
T  195009 ccacttgaccttatccaacaactgatcaatggaactacctacattattaaacaacctttgattacggtcattccatataatccacgcacaaagcaaccag 195108  T
Q  746 acaagctgca 755  Q
    ||||||||||    
T  195109 acaagctgca 195118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 646 - 755
Target Start/End: Original strand, 309846 - 309955
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaa 745  Q
    |||||| || ||||||| ||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||  | |||||| ||  |||||||||     
T  309846 ccacttgaccttatccaacaactgatcaatggaactacctacattattaaacaacctttgattacggtcattccatataatccacgcacaaagcaaccag 309945  T
Q  746 acaagctgca 755  Q
    ||||||||||    
T  309946 acaagctgca 309955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 758
Target Start/End: Original strand, 5971413 - 5971518
Alignment:
Q  653 actttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaagct 752  Q
    |||||||||| ||||| ||||||| | |||||| ||||  |||||||||||||||| || ||||||||| |||||||| ||  ||| |||||||||||||    
T  5971413 actttatccaacaacttatcaatggaactacctatattagtaaacaacctttgattccgatcattccaaatgatccacgcacaaagtaaccaaacaagct 5971512  T
Q  753 gcaaaa 758  Q
    ||||||    
T  5971513 gcaaaa 5971518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 651 - 753
Target Start/End: Complemental strand, 38140826 - 38140724
Alignment:
Q  651 ttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaag 750  Q
    |||||||||||| ||| ||||| ||||| || ||| |||| |||||||||||||||||||||||||||||  | ||| || ||  |||||||||||||||    
T  38140826 ttactttatccaacaattgatctatgaaacttcctatattattaaacaacctttgattacggtcattccacataatcaacgcacaaagcaaccaaacaag 38140727  T
Q  751 ctg 753  Q
    |||    
T  38140726 ctg 38140724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 646 - 755
Target Start/End: Original strand, 14023094 - 14023203
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaa 745  Q
    |||||| || ||||||| ||||||||||||| | ||||||  ||| ||||||| |||||||||||||||||||||  | |||||| ||  |||||||||     
T  14023094 ccacttgaccttatccaacaactgatcaatggaactacctacattattaaacagcctttgattacggtcattccatataatccacgcacaaagcaaccag 14023193  T
Q  746 acaagctgca 755  Q
    ||||||||||    
T  14023194 acaagctgca 14023203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 646 - 720
Target Start/End: Original strand, 36492060 - 36492134
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattcca 720  Q
    |||||| || ||||||| ||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||    
T  36492060 ccacttgaccttatccaacaactgatcaatggaactacctacattattaaacaacctttgattacggtcattcca 36492134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 752
Target Start/End: Original strand, 2180518 - 2180606
Alignment:
Q  664 caactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaagct 752  Q
    ||||||||||||| | ||||||  ||| ||||||| |||||||||||||||||||||  | |||||| ||  ||||||||| |||||||    
T  2180518 caactgatcaatggaactacctacattattaaacagcctttgattacggtcattccatataatccacgcacaaagcaaccagacaagct 2180606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 649 - 756
Target Start/End: Original strand, 366580 - 366687
Alignment:
Q  649 ctttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaaca 748  Q
    |||||||||||| | || |||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  366580 ctttactttatctatcatctgatcaatagagctacctgtattgttaaacaacctttgattacggtcattccaaatgatccacacagtaagcaaccaaaca 366679  T
Q  749 agctgcaa 756  Q
    ||||||||    
T  366680 agctgcaa 366687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 445 - 554
Target Start/End: Original strand, 366376 - 366486
Alignment:
Q  445 acaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaa-agtatttacaaatatacagggtcaaac 543  Q
    |||||||||||||||||||||||||||||  ||  | ||||||||||||||||||||||||  ||||  ||| ||||||||||||||||||  |||||||    
T  366376 acaataaaaaatggaacttatattaacaatccacgggcacctccaagtacaagatgtaccatggaggctcaagagtatttacaaatatacatagtcaaac 366475  T
Q  544 aaaaattagcc 554  Q
    |||||||||||    
T  366476 aaaaattagcc 366486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 4e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 616 - 759
Target Start/End: Original strand, 36685494 - 36685636
Alignment:
Q  616 ttattagtttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtca 715  Q
    ||||||| ||||||||||||||||| | |||| ||| ||| | |||||||||||||||||| | |||||||||||||| |||||||||||||||| ||||    
T  36685494 ttattagcttttagccaccaaagggaa-taccgcttgactgtgtccagcaactgatcaatggatctacctgtattgttgaacaacctttgattacagtca 36685592  T
Q  716 ttccaagtgatccacacagtaagcaaccaaacaagctgcaaaaa 759  Q
    |||||| ||||||||||| ||| |||||||| ||||||||||||    
T  36685593 ttccaaatgatccacacactaatcaaccaaagaagctgcaaaaa 36685636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 444 - 554
Target Start/End: Original strand, 11866912 - 11867022
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaac 543  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||||||||| ||||  || ||||||||||||||||||| |||||||    
T  11866912 aacaataaaaaatggaacttatattaacaaaccacggacacctccaactacaagatgtaccaaggaggctcagagtatttacaaatatacagagtcaaac 11867011  T
Q  544 aaaaattagcc 554  Q
    |||||||||||    
T  11867012 aaaaattagcc 11867022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 443 - 558
Target Start/End: Original strand, 36685316 - 36685436
Alignment:
Q  443 gaacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaa- 541  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||| |||||||||||| || | | ||||||||||||||||||||  |||||     
T  36685316 gaacaataaaaaatggaacttatattaacaaaacacggacacctccaagtataagatgtaccaaggaagcctaaagtatttacaaatatacaaagtcaat 36685415  T
Q  542 ----acaaaaattagccaagt 558  Q
        |||||||||||||||||    
T  36685416 caagacaaaaattagccaagt 36685436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 444 - 554
Target Start/End: Complemental strand, 27527994 - 27527883
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatg-aggtccaaagtatttacaaatatacagggtcaaa 542  Q
    ||||||||||||||||||||||||||||||||||  | ||||||| ||||||||||||||||  | || || | |||||| |||||||||||   |||||    
T  27527994 aacaataaaaaatggaacttatattaacaaatcacgggcacctcctagtacaagatgtaccagggaagctcaagagtattgacaaatatacataatcaaa 27527895  T
Q  543 caaaaattagcc 554  Q
    |||| |||||||    
T  27527894 caaagattagcc 27527883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 646 - 755
Target Start/End: Complemental strand, 14863478 - 14863369
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaa 745  Q
    |||||| || ||||||| ||||||||||||| | ||||||  ||| |||||||||||||||||||||||||| ||  | |||||| ||  |||||||||     
T  14863478 ccacttgaccttatccaacaactgatcaatggaactacctacattattaaacaacctttgattacggtcatttcatataatccacgcacaaagcaaccag 14863379  T
Q  746 acaagctgca 755  Q
    ||||||||||    
T  14863378 acaagctgca 14863369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 653 - 758
Target Start/End: Original strand, 45269927 - 45270032
Alignment:
Q  653 actttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaagct 752  Q
    |||||||||| ||||||||||||  | |||| | ||||  |||||||||||||||| || ||||||||| |||||||| ||  ||| |||||||||||||    
T  45269927 actttatccaacaactgatcaatagaactacttatattagtaaacaacctttgattccgatcattccaaatgatccacgcataaagtaaccaaacaagct 45270026  T
Q  753 gcaaaa 758  Q
    ||||||    
T  45270027 gcaaaa 45270032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 653 - 729
Target Start/End: Original strand, 41149818 - 41149894
Alignment:
Q  653 actttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatcca 729  Q
    |||||||||| ||||||||||||| | |||||| ||||  |||||||||||||||| |||||| ||||| |||||||    
T  41149818 actttatccaacaactgatcaatggaactacctatattagtaaacaacctttgattccggtcactccaaatgatcca 41149894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 624 - 755
Target Start/End: Original strand, 21076782 - 21076912
Alignment:
Q  624 ttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagt 723  Q
    ||||||||||||||| | |||||| |||||||||||||| ||| ||||||||| | ||||||  |||||| ||||||||||||||||||||||||||| |    
T  21076782 ttttagccaccaaagtg-agtaccgctttactttatccaacaattgatcaatggaactacctaaattgttgaacaacctttgattacggtcattccaaat 21076880  T
Q  724 gatccacacagtaagcaaccaaacaagctgca 755  Q
    |||||||  |  ||||||||||||||| ||||    
T  21076881 gatccacgtacaaagcaaccaaacaagatgca 21076912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 650 - 756
Target Start/End: Complemental strand, 9725138 - 9725032
Alignment:
Q  650 tttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaa 749  Q
    ||||||||||||| ||  ||||||||  |||||||||  || ||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||    
T  9725138 tttactttatccatcatgtgatcaatagagctacctgagttattaaacaacctctgattgcggtcattccaaatgatccacacagtaagcaaccacacaa 9725039  T
Q  750 gctgcaa 756  Q
    |||||||    
T  9725038 gctgcaa 9725032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 646 - 755
Target Start/End: Original strand, 41589776 - 41589885
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaa 745  Q
    |||||| || ||||||| ||||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||  | |||||| ||  |||||||||     
T  41589776 ccacttgaccttatccaacaactgatcaatggagctacctacattattaaacaacctttgattacggtcattccatataatccacgcacaaagcaaccag 41589875  T
Q  746 acaagctgca 755  Q
    ||||||||||    
T  41589876 acaagctgca 41589885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 644 - 755
Target Start/End: Complemental strand, 18693123 - 18693012
Alignment:
Q  644 taccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaacc 743  Q
    |||||||| || ||||||| ||| ||||||||| | | ||||  ||| |||||||||||||||||||||||||||||  |||||||||||  ||||||||    
T  18693123 taccacttgacattatccaacaattgatcaatggaacgacctacattattaaacaacctttgattacggtcattccatatgatccacacacaaagcaacc 18693024  T
Q  744 aaacaagctgca 755  Q
    | ||||||||||    
T  18693023 agacaagctgca 18693012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 547
Target Start/End: Original strand, 2249866 - 2249962
Alignment:
Q  451 aaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaacaaaa 547  Q
    ||||||||||||| ||||||||||| |   || | |||||||||||||||||||||  |  |||||||||||||||||||||||| |||||||||||    
T  2249866 aaaaatggaacttgtattaacaaattacgaactcttccaagtacaagatgtaccaagaaaatccaaagtatttacaaatatacagagtcaaacaaaa 2249962  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 653 - 755
Target Start/End: Complemental strand, 26413441 - 26413339
Alignment:
Q  653 actttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaagct 752  Q
    |||||||||| ||||||||| ||| | || ||| |||| ||||||||||||||||||||||||||||| ||||||||| ||   | |||||||||||| |    
T  26413441 actttatccaacaactgatctatggaacttcctatattattaaacaacctttgattacggtcattccatgtgatccacgcacataccaaccaaacaagtt 26413342  T
Q  753 gca 755  Q
    |||    
T  26413341 gca 26413339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 646 - 755
Target Start/End: Complemental strand, 4298770 - 4298661
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaa 745  Q
    |||||| || ||||||| ||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||  | |||||| |   |||||||||     
T  4298770 ccacttgaccttatccaacaactgatcaatggaactacctacattattaaacaacctttgattacggtcattccatataatccacgcgcaaagcaaccag 4298671  T
Q  746 acaagctgca 755  Q
    ||||||||||    
T  4298670 acaagctgca 4298661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 653 - 758
Target Start/End: Original strand, 25671638 - 25671743
Alignment:
Q  653 actttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaaacaagct 752  Q
    |||||||||| ||||||||||||| | |||||| ||||  ||||||| ||||||||  | ||||||||| |||||||| ||  ||| |||||||||||||    
T  25671638 actttatccaacaactgatcaatggaactacctatattagtaaacaatctttgattctgatcattccaaatgatccacgcacaaagtaaccaaacaagct 25671737  T
Q  753 gcaaaa 758  Q
    ||||||    
T  25671738 gcaaaa 25671743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 646 - 755
Target Start/End: Original strand, 29152977 - 29153086
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaa 745  Q
    |||||| || |||||||  |||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||  | || ||||||  ||||||| |     
T  29152977 ccacttgaccttatccaataactgatcaatggaactacctacattattaaacaacctttgattacggtcattccatataattcacacacaaagcaactag 29153076  T
Q  746 acaagctgca 755  Q
    ||||||||||    
T  29153077 acaagctgca 29153086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 554
Target Start/End: Complemental strand, 9725342 - 9725233
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaac 543  Q
    |||||| ||||||| |||||||||| ||||| ||  ||||| ||| ||||||||||||||||   || || | |||||| |||||||||||   ||||||    
T  9725342 aacaatcaaaaatgaaacttatattcacaaa-cacggacacttcctagtacaagatgtaccaggaagctcaagagtattgacaaatatacataatcaaac 9725244  T
Q  544 aaaaattagcc 554  Q
    |||||||||||    
T  9725243 aaaaattagcc 9725233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 473
Target Start/End: Original strand, 40955324 - 40955353
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaa 473  Q
    ||||||||||||||||||||||||||||||    
T  40955324 aacaataaaaaatggaacttatattaacaa 40955353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 444 - 558
Target Start/End: Complemental strand, 65257 - 65143
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaac 543  Q
    |||||| |||||||||| ||||||||||||||||  ||||| |||||||||||||||||||||  | | ||||||||||||||||||||||  |||||||    
T  65257 aacaatcaaaaatggaatttatattaacaaatcacggacacttccaagtacaagatgtaccaagaaagcccaaagtatttacaaatatacaaagtcaaac 65158  T
Q  544 aaaaattagccaagt 558  Q
    || ||| || |||||    
T  65157 aataatcaggcaagt 65143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 704 - 755
Target Start/End: Complemental strand, 65042 - 64991
Alignment:
Q  704 tgattacggtcattccaagtgatccacacagtaagcaaccaaacaagctgca 755  Q
    ||||| |||||||||||| ||||||| ||| |||||||||||||||||||||    
T  65042 tgattccggtcattccaaatgatccatacactaagcaaccaaacaagctgca 64991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 444 - 558
Target Start/End: Original strand, 133375 - 133489
Alignment:
Q  444 aacaataaaaaatggaacttatattaacaaatcatagacacctccaagtacaagatgtaccaatgaggtccaaagtatttacaaatatacagggtcaaac 543  Q
    |||||| |||||||||| ||||||||||||||||  ||||| |||||||||||||||||||||  | | ||||||||||||||||||||||  |||||||    
T  133375 aacaatcaaaaatggaatttatattaacaaatcacggacacttccaagtacaagatgtaccaagaaagcccaaagtatttacaaatatacaaagtcaaac 133474  T
Q  544 aaaaattagccaagt 558  Q
    || ||| || |||||    
T  133475 aataatcaggcaagt 133489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 704 - 755
Target Start/End: Original strand, 133590 - 133641
Alignment:
Q  704 tgattacggtcattccaagtgatccacacagtaagcaaccaaacaagctgca 755  Q
    ||||| |||||||||||| ||||||| ||| |||||||||||||||||||||    
T  133590 tgattccggtcattccaaatgatccatacactaagcaaccaaacaagctgca 133641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 646 - 755
Target Start/End: Original strand, 26328 - 26437
Alignment:
Q  646 ccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagtgatccacacagtaagcaaccaa 745  Q
    ||||||||||||||||| || |||||||||| | ||||||  ||| |||||||||||||||||||||||||||||  |||||||  ||  ||||||||||    
T  26328 ccactttactttatccaacagctgatcaatggaactacctacattattaaacaacctttgattacggtcattccatatgatccatgcacaaagcaaccaa 26427  T
Q  746 acaagctgca 755  Q
    ||||||||||    
T  26428 acaagctgca 26437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 624 - 755
Target Start/End: Complemental strand, 4083 - 3953
Alignment:
Q  624 ttttagccaccaaaggggagtaccactttactttatccagcaactgatcaatgaagctacctgtattgttaaacaacctttgattacggtcattccaagt 723  Q
    ||||||||||||||| | ||| || |||||||||||| |  ||||| || ||| | |||  |||||||||||||||||| |||||||| || |||||  |    
T  4083 ttttagccaccaaagag-agtgccgctttactttatctaataactggtctatggaactagttgtattgttaaacaacctatgattacgatcgttccatat 3985  T
Q  724 gatccacacagtaagcaaccaaacaagctgca 755  Q
    ||||||| | |||||| ||||||| |||||||    
T  3984 gatccacgcggtaagcgaccaaactagctgca 3953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 443 - 473
Target Start/End: Complemental strand, 3920 - 3890
Alignment:
Q  443 gaacaataaaaaatggaacttatattaacaa 473  Q
    |||||||||||||||||||||||||||||||    
T  3920 gaacaataaaaaatggaacttatattaacaa 3890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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